A B C D E F G H I J K L M N O P Q R S T U V W X _

A

ACCESSOR - Static variable in interface org.openprovenance.model.collections.CollectionURIs

Account - Class in org.openprovenance.model

Java class for Account complex type.

Account() - Constructor for class org.openprovenance.model.Account

account - Variable in class org.openprovenance.model.Accounts

account - Variable in class org.openprovenance.model.Agent

account - Variable in class org.openprovenance.model.Artifact

account - Variable in class org.openprovenance.model.EmbeddedAnnotation

account - Variable in class org.openprovenance.model.Overlaps

account - Variable in class org.openprovenance.model.printer.AccountMap

account - Variable in class org.openprovenance.model.Process

account - Variable in class org.openprovenance.model.Used

account - Variable in class org.openprovenance.model.UsedStar

account - Variable in class org.openprovenance.model.WasControlledBy

account - Variable in class org.openprovenance.model.WasDerivedFrom

account - Variable in class org.openprovenance.model.WasDerivedFromStar

account - Variable in class org.openprovenance.model.WasGeneratedBy

account - Variable in class org.openprovenance.model.WasGeneratedByStar

account - Variable in class org.openprovenance.model.WasTriggeredBy

account - Variable in class org.openprovenance.model.WasTriggeredByStar

Account - Interface in org.openprovenance.rdf

The class representing an OPM Account.

AccountColorMapEntry - Class in org.openprovenance.model.printer

Java class for AccountColorMapEntry complex type.

AccountColorMapEntry() - Constructor for class org.openprovenance.model.printer.AccountColorMapEntry

AccountMap - Class in org.openprovenance.model.printer

Java class for AccountMap complex type.

AccountMap() - Constructor for class org.openprovenance.model.printer.AccountMap

accountMembership(ArtifactRef, OPMGraph) - Method in class org.openprovenance.model.OPMUtilities

AccountOrAnnotationOrEdgeOrNodeOrOPMGraphOrRole - Interface in org.openprovenance.rdf

AccountRef - Class in org.openprovenance.model

Java class for AccountRef complex type.

AccountRef() - Constructor for class org.openprovenance.model.AccountRef

Accounts - Class in org.openprovenance.model

Java class for Accounts complex type.

Accounts() - Constructor for class org.openprovenance.model.Accounts

accounts - Variable in class org.openprovenance.model.OPMGraph

accounts - Variable in class org.openprovenance.model.printer.OPMPrinterConfiguration

addAccount(String, Account) - Method in class org.openprovenance.model.IndexedOPMGraph

addAccount(Account) - Method in class org.openprovenance.model.IndexedOPMGraph

addAccounts(HasAccounts, Collection<AccountRef>) - Method in class org.openprovenance.elmo.RdfOPMFactory

addAccounts(AnnotationOrEdgeOrNode, List<AccountRef>) - Method in class org.openprovenance.elmo.RdfOPMFactory

addAccounts(HasAccounts, Collection<Account>, Object) - Method in class org.openprovenance.model.OPMFactory

addAccounts(HasAccounts, Collection<AccountRef>) - Method in class org.openprovenance.model.OPMFactory

addAgent(Agent) - Method in class org.openprovenance.model.IndexedOPMGraph

addAgent(String, Agent) - Method in class org.openprovenance.model.IndexedOPMGraph

addAgentColor(Agent, HashMap<String, String>) - Method in class org.openprovenance.model.OPMToDot

addAgentLabel(Agent, HashMap<String, String>) - Method in class org.openprovenance.model.OPMToDot

addAgentShape(Agent, HashMap<String, String>) - Method in class org.openprovenance.model.OPMToDot

addAnnotation(Annotable, JAXBElement<? extends EmbeddedAnnotation>) - Method in class org.openprovenance.elmo.RdfOPMFactory

addAnnotation(Annotable, Label) - Method in class org.openprovenance.elmo.RdfOPMFactory

addAnnotation(Annotable, Type) - Method in class org.openprovenance.elmo.RdfOPMFactory

addAnnotation(Annotable, Value) - Method in class org.openprovenance.elmo.RdfOPMFactory

addAnnotation(Annotable, Annotation) - Method in class org.openprovenance.elmo.RdfOPMFactory

addAnnotation(Annotable, EmbeddedAnnotation) - Method in class org.openprovenance.elmo.RdfOPMFactory

Add annotation to an annotable JAXB Bean and its corresponding RDF facade.

addAnnotation(Annotable, Label) - Method in class org.openprovenance.model.OPMFactory

addAnnotation(Annotable, Value) - Method in class org.openprovenance.model.OPMFactory

addAnnotation(Annotable, Profile) - Method in class org.openprovenance.model.OPMFactory

addAnnotation(Annotable, PName) - Method in class org.openprovenance.model.OPMFactory

addAnnotation(Annotable, EmbeddedAnnotation) - Method in class org.openprovenance.model.OPMFactory

addAnnotation(Annotable, JAXBElement<? extends EmbeddedAnnotation>) - Method in class org.openprovenance.model.OPMFactory

addAnnotation(Annotable, List<EmbeddedAnnotation>) - Method in class org.openprovenance.model.OPMFactory

addAnnotationColor(EmbeddedAnnotation, HashMap<String, String>) - Method in class org.openprovenance.model.OPMToDot

addAnnotationLabel(EmbeddedAnnotation, HashMap<String, String>) - Method in class org.openprovenance.model.OPMToDot

addAnnotationLinkProperties(EmbeddedAnnotation, HashMap<String, String>) - Method in class org.openprovenance.model.OPMToDot

addAnnotations(Annotable, List<JAXBElement<? extends EmbeddedAnnotation>>) - Method in class org.openprovenance.model.OPMFactory

addAnnotationShape(EmbeddedAnnotation, HashMap<String, String>) - Method in class org.openprovenance.model.OPMToDot

addArtifact(Artifact) - Method in class org.openprovenance.model.IndexedOPMGraph

addArtifact(String, Artifact) - Method in class org.openprovenance.model.IndexedOPMGraph

addArtifactColor(Artifact, HashMap<String, String>) - Method in class org.openprovenance.model.OPMToDot

addArtifactLabel(Artifact, HashMap<String, String>) - Method in class org.openprovenance.model.OPMToDot

addArtifactShape(Artifact, HashMap<String, String>) - Method in class org.openprovenance.model.OPMToDot

addCompactAnnotation(Annotable, List<EmbeddedAnnotation>) - Method in class org.openprovenance.model.OPMFactory

addEdgeAttributes(String, Edge, HashMap<String, String>) - Method in class org.openprovenance.model.OPMToDot

addEdgeLabel(Edge, HashMap<String, String>) - Method in class org.openprovenance.model.OPMToDot

addNewAnnotations(Annotable, List<JAXBElement<? extends EmbeddedAnnotation>>) - Method in class org.openprovenance.elmo.RdfOPMFactory

addNewAnnotations(Annotable, List<JAXBElement<? extends EmbeddedAnnotation>>) - Method in class org.openprovenance.model.OPMFactory

addPrefixes(String, String) - Method in class org.openprovenance.jena.Querier

addProcess(Process) - Method in class org.openprovenance.model.IndexedOPMGraph

addProcess(String, Process) - Method in class org.openprovenance.model.IndexedOPMGraph

addProcessColor(Process, HashMap<String, String>) - Method in class org.openprovenance.model.OPMToDot

addProcessLabel(Process, HashMap<String, String>) - Method in class org.openprovenance.model.OPMToDot

addProcessShape(Process, HashMap<String, String>) - Method in class org.openprovenance.model.OPMToDot

addProperty(EmbeddedAnnotation, Property) - Method in class org.openprovenance.elmo.RdfOPMFactory

addProperty(Annotation, Property) - Method in class org.openprovenance.elmo.RdfOPMFactory

addProperty(Annotation, Property) - Method in class org.openprovenance.model.OPMFactory

addProperty(Annotation, List<Property>) - Method in class org.openprovenance.model.OPMFactory

addProperty(EmbeddedAnnotation, Property) - Method in class org.openprovenance.model.OPMFactory

addProperty(EmbeddedAnnotation, List<Property>) - Method in class org.openprovenance.model.OPMFactory

addUsed(Used) - Method in class org.openprovenance.model.IndexedOPMGraph

Add a used edge to the graph.

addValue(Artifact, Object, String) - Method in class org.openprovenance.model.OPMFactory

addWasControlledBy(WasControlledBy) - Method in class org.openprovenance.model.IndexedOPMGraph

Add a wasControlledBy edge to the graph.

addWasDerivedFrom(WasDerivedFrom) - Method in class org.openprovenance.model.IndexedOPMGraph

Add a wasDerivedFrom edge to the graph.

addWasGeneratedBy(WasGeneratedBy) - Method in class org.openprovenance.model.IndexedOPMGraph

Add a wasGeneratedBy edge to the graph.

addWasTriggeredBy(WasTriggeredBy) - Method in class org.openprovenance.model.IndexedOPMGraph

Add a wasTriggeredBy edge to the graph.

Agent - Class in org.openprovenance.model

Java class for Agent complex type.

Agent() - Constructor for class org.openprovenance.model.Agent

agent - Variable in class org.openprovenance.model.Agents

agent - Variable in class org.openprovenance.model.printer.AgentMap

Agent - Interface in org.openprovenance.rdf

agentColor(Agent) - Method in class org.openprovenance.model.OPMToDot

agentLabel(Agent) - Method in class org.openprovenance.model.OPMToDot

AgentMap - Class in org.openprovenance.model.printer

Java class for AgentMap complex type.

AgentMap() - Constructor for class org.openprovenance.model.printer.AgentMap

AgentMapEntry - Class in org.openprovenance.model.printer

Java class for AgentMapEntry complex type.

AgentMapEntry() - Constructor for class org.openprovenance.model.printer.AgentMapEntry

AgentRef - Class in org.openprovenance.model

Java class for AgentRef complex type.

AgentRef() - Constructor for class org.openprovenance.model.AgentRef

Agents - Class in org.openprovenance.model

Java class for Agents complex type.

Agents() - Constructor for class org.openprovenance.model.Agents

agents - Variable in class org.openprovenance.model.OPMGraph

agents - Variable in class org.openprovenance.model.printer.OPMPrinterConfiguration

Annotable - Interface in org.openprovenance.model

Annotable - Interface in org.openprovenance.rdf

The set of OPM entities that can be annotated.

annotation - Variable in class org.openprovenance.model.Account

annotation - Variable in class org.openprovenance.model.Agent

Annotation - Class in org.openprovenance.model

Java class for Annotation complex type.

Annotation() - Constructor for class org.openprovenance.model.Annotation

annotation - Variable in class org.openprovenance.model.Annotations

annotation - Variable in class org.openprovenance.model.Artifact

annotation - Variable in class org.openprovenance.model.EmbeddedAnnotation

annotation - Variable in class org.openprovenance.model.OPMGraph

annotation - Variable in class org.openprovenance.model.Process

annotation - Variable in class org.openprovenance.model.Role

annotation - Variable in class org.openprovenance.model.Used

annotation - Variable in class org.openprovenance.model.UsedStar

annotation - Variable in class org.openprovenance.model.WasControlledBy

annotation - Variable in class org.openprovenance.model.WasDerivedFrom

annotation - Variable in class org.openprovenance.model.WasDerivedFromStar

annotation - Variable in class org.openprovenance.model.WasGeneratedBy

annotation - Variable in class org.openprovenance.model.WasGeneratedByStar

annotation - Variable in class org.openprovenance.model.WasTriggeredBy

annotation - Variable in class org.openprovenance.model.WasTriggeredByStar

Annotation - Interface in org.openprovenance.rdf

OPM class used to annotate Annotable entities.

annotationColor(EmbeddedAnnotation) - Method in class org.openprovenance.model.OPMToDot

annotationId(String, String) - Method in class org.openprovenance.model.OPMToDot

AnnotationOrEdgeOrNode - Interface in org.openprovenance.rdf

AnnotationRef - Class in org.openprovenance.model

Java class for AnnotationRef complex type.

AnnotationRef() - Constructor for class org.openprovenance.model.AnnotationRef

Annotations - Class in org.openprovenance.model

Java class for Annotations complex type.

Annotations() - Constructor for class org.openprovenance.model.Annotations

annotations - Variable in class org.openprovenance.model.OPMGraph

Artifact - Class in org.openprovenance.model

Java class for Artifact complex type.

Artifact() - Constructor for class org.openprovenance.model.Artifact

artifact - Variable in class org.openprovenance.model.Artifacts

artifact - Variable in class org.openprovenance.model.printer.ArtifactMap

Artifact - Interface in org.openprovenance.rdf

artifactColor(Artifact) - Method in class org.openprovenance.model.OPMToDot

artifactLabel(Artifact) - Method in class org.openprovenance.model.OPMToDot

ArtifactMap - Class in org.openprovenance.model.printer

Java class for ArtifactMap complex type.

ArtifactMap() - Constructor for class org.openprovenance.model.printer.ArtifactMap

ArtifactMapEntry - Class in org.openprovenance.model.printer

Java class for ArtifactMapEntry complex type.

ArtifactMapEntry() - Constructor for class org.openprovenance.model.printer.ArtifactMapEntry

ArtifactRef - Class in org.openprovenance.model

Java class for ArtifactRef complex type.

ArtifactRef() - Constructor for class org.openprovenance.model.ArtifactRef

Artifacts - Class in org.openprovenance.model

Java class for Artifacts complex type.

Artifacts() - Constructor for class org.openprovenance.model.Artifacts

artifacts - Variable in class org.openprovenance.model.OPMGraph

artifacts - Variable in class org.openprovenance.model.printer.OPMPrinterConfiguration

autoGenerateId(String) - Method in class org.openprovenance.elmo.RdfOPMFactory

autoGenerateId(String, String) - Method in class org.openprovenance.elmo.RdfOPMFactory

autoGenerateId(String) - Method in class org.openprovenance.model.OPMFactory

By default, no auto generation of Id.

autoGenerateId(String, String) - Method in class org.openprovenance.model.OPMFactory

Conditional autogeneration of Id.

AValue - Interface in org.openprovenance.rdf

The serial representation of an artifact Value

B

builder - Static variable in class org.openprovenance.model.OPMFactory

C

cause - Variable in class org.openprovenance.model.Used

cause - Variable in class org.openprovenance.model.UsedStar

cause - Variable in class org.openprovenance.model.WasControlledBy

cause - Variable in class org.openprovenance.model.WasDerivedFrom

cause - Variable in class org.openprovenance.model.WasDerivedFromStar

cause - Variable in class org.openprovenance.model.WasGeneratedBy

cause - Variable in class org.openprovenance.model.WasGeneratedByStar

cause - Variable in class org.openprovenance.model.WasTriggeredBy

cause - Variable in class org.openprovenance.model.WasTriggeredByStar

close() - Method in class org.openprovenance.jena.Querier

CollectionFactory - Class in org.openprovenance.model.collections

An extended Factory of OPM objects related to Collections.

CollectionFactory(OPMFactory) - Constructor for class org.openprovenance.model.collections.CollectionFactory

CollectionURIs - Interface in org.openprovenance.model.collections

color - Variable in class org.openprovenance.model.printer.AccountColorMapEntry

coloredAsAccount - Variable in class org.openprovenance.model.printer.AgentMap

coloredAsAccount - Variable in class org.openprovenance.model.printer.ArtifactMap

coloredAsAccount - Variable in class org.openprovenance.model.printer.ProcessMap

CommonURIs - Interface in org.openprovenance.model

CompactAnnotation - Interface in org.openprovenance.elmo

compactAnnotation(EmbeddedAnnotation) - Method in class org.openprovenance.model.OPMFactory

compactId - Variable in class org.openprovenance.model.OPMFactory

configurePrefixes(Marshaller) - Method in class org.openprovenance.model.OPMSerialiser

CONSTRUCTOR - Static variable in interface org.openprovenance.model.collections.CollectionURIs

CONTAINED - Static variable in interface org.openprovenance.model.collections.CollectionURIs

content - Variable in class org.openprovenance.model.Value

convert(String, String, String) - Method in class org.openprovenance.model.OPMToDot

convert(OPMGraph, String, String) - Method in class org.openprovenance.model.OPMToDot

convert(OPMGraph, File) - Method in class org.openprovenance.model.OPMToDot

convert(OPMGraph, PrintStream) - Method in class org.openprovenance.model.OPMToDot

convertAccount(String) - Method in class org.openprovenance.model.OPMToDot

convertAgentName(String) - Method in class org.openprovenance.model.OPMToDot

convertArtifactName(String) - Method in class org.openprovenance.model.OPMToDot

convertEdgeLabel(String) - Method in class org.openprovenance.model.OPMToDot

convertProcessName(String) - Method in class org.openprovenance.model.OPMToDot

convertProperty(String) - Method in class org.openprovenance.model.OPMToDot

convertValue(Object) - Method in class org.openprovenance.model.OPMToDot

createAccount() - Method in class org.openprovenance.elmo.RdfObjectFactory

createAccount() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of Account

createAccountColorMapEntry() - Method in class org.openprovenance.model.printer.ObjectFactory

Create an instance of AccountColorMapEntry

createAccountMap() - Method in class org.openprovenance.model.printer.ObjectFactory

Create an instance of AccountMap

createAccountRef() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of AccountRef

createAccounts() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of Accounts

createAgent() - Method in class org.openprovenance.elmo.RdfObjectFactory

createAgent() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of Agent

createAgentMap() - Method in class org.openprovenance.model.printer.ObjectFactory

Create an instance of AgentMap

createAgentMapEntry() - Method in class org.openprovenance.model.printer.ObjectFactory

Create an instance of AgentMapEntry

createAgentRef() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of AgentRef

createAgents() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of Agents

createAnnotation() - Method in class org.openprovenance.elmo.RdfObjectFactory

createAnnotation() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of Annotation

createAnnotation(EmbeddedAnnotation) - Method in class org.openprovenance.model.ObjectFactory

Create an instance of JAXBElement<EmbeddedAnnotation>}

createAnnotationRef() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of AnnotationRef

createAnnotations() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of Annotations

createArtifact() - Method in class org.openprovenance.elmo.RdfObjectFactory

createArtifact() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of Artifact

createArtifactMap() - Method in class org.openprovenance.model.printer.ObjectFactory

Create an instance of ArtifactMap

createArtifactMapEntry() - Method in class org.openprovenance.model.printer.ObjectFactory

Create an instance of ArtifactMapEntry

createArtifactRef() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of ArtifactRef

createArtifacts() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of Artifacts

createConfiguration(OPMPrinterConfiguration) - Method in class org.openprovenance.model.printer.ObjectFactory

Create an instance of JAXBElement<OPMPrinterConfiguration>}

createDependencies() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of Dependencies

createDependencyRef() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of DependencyRef

createEdgeStyleMap() - Method in class org.openprovenance.model.printer.ObjectFactory

Create an instance of EdgeStyleMap

createEdgeStyleMapEntry() - Method in class org.openprovenance.model.printer.ObjectFactory

Create an instance of EdgeStyleMapEntry

createEmbeddedAnnotation() - Method in class org.openprovenance.elmo.RdfObjectFactory

createEmbeddedAnnotation() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of EmbeddedAnnotation

createLabel() - Method in class org.openprovenance.elmo.RdfObjectFactory

createLabel() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of Label

createLabel(Label) - Method in class org.openprovenance.model.ObjectFactory

Create an instance of JAXBElement<Label>}

createMap() - Method in class org.openprovenance.model.printer.ObjectFactory

Create an instance of Map

createMapEntry() - Method in class org.openprovenance.model.printer.ObjectFactory

Create an instance of MapEntry

createOPMGraph() - Method in class org.openprovenance.elmo.RdfObjectFactory

createOPMGraph() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of OPMGraph

createOpmGraph(OPMGraph) - Method in class org.openprovenance.model.ObjectFactory

Create an instance of JAXBElement<OPMGraph>}

createOPMGraphRef() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of OPMGraphRef

createOPMPrinterConfiguration() - Method in class org.openprovenance.model.printer.ObjectFactory

Create an instance of OPMPrinterConfiguration

createOTime() - Method in class org.openprovenance.elmo.RdfObjectFactory

createOTime() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of OTime

createOverlaps() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of Overlaps

createPName() - Method in class org.openprovenance.elmo.RdfObjectFactory

createPName() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of PName

createPname(PName) - Method in class org.openprovenance.model.ObjectFactory

Create an instance of JAXBElement<PName>}

createProcess() - Method in class org.openprovenance.elmo.RdfObjectFactory

createProcess() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of Process

createProcesses() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of Processes

createProcessMap() - Method in class org.openprovenance.model.printer.ObjectFactory

Create an instance of ProcessMap

createProcessMapEntry() - Method in class org.openprovenance.model.printer.ObjectFactory

Create an instance of ProcessMapEntry

createProcessRef() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of ProcessRef

createProfile() - Method in class org.openprovenance.elmo.RdfObjectFactory

createProfile() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of Profile

createProfile(Profile) - Method in class org.openprovenance.model.ObjectFactory

Create an instance of JAXBElement<Profile>}

createProperty() - Method in class org.openprovenance.elmo.RdfObjectFactory

createProperty() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of Property

createRole() - Method in class org.openprovenance.elmo.RdfObjectFactory

createRole() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of Role

createRoleRef() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of RoleRef

createType() - Method in class org.openprovenance.elmo.RdfObjectFactory

createType() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of Type

createType(Type) - Method in class org.openprovenance.model.ObjectFactory

Create an instance of JAXBElement<Type>}

createType(TypeURI) - Method in class org.openprovenance.profile.collections.ObjectFactory

Create an instance of JAXBElement<TypeURI>}

createUsed() - Method in class org.openprovenance.elmo.RdfObjectFactory

createUsed() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of Used

createUsedStar() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of UsedStar

createValue() - Method in class org.openprovenance.elmo.RdfObjectFactory

createValue() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of Value

createValue(Value) - Method in class org.openprovenance.model.ObjectFactory

Create an instance of JAXBElement<Value>}

createWasControlledBy() - Method in class org.openprovenance.elmo.RdfObjectFactory

createWasControlledBy() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of WasControlledBy

createWasDerivedFrom() - Method in class org.openprovenance.elmo.RdfObjectFactory

createWasDerivedFrom() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of WasDerivedFrom

createWasDerivedFromStar() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of WasDerivedFromStar

createWasGeneratedBy() - Method in class org.openprovenance.elmo.RdfObjectFactory

createWasGeneratedBy() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of WasGeneratedBy

createWasGeneratedByStar() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of WasGeneratedByStar

createWasTriggeredBy() - Method in class org.openprovenance.elmo.RdfObjectFactory

createWasTriggeredBy() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of WasTriggeredBy

createWasTriggeredByStar() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of WasTriggeredByStar

D

dataFactory - Variable in class org.openprovenance.model.OPMFactory

DcResource - Interface in org.openprovenance.dc

DEFAULT_CONFIGURATION_FILE - Static variable in class org.openprovenance.model.OPMToDot

DEFAULT_CONFIGURATION_FILE_WITH_ROLE - Static variable in class org.openprovenance.model.OPMToDot

defaultAccount - Variable in class org.openprovenance.model.printer.AccountMap

defaultColor - Variable in class org.openprovenance.model.printer.AccountMap

defaultEmptyDocument() - Method in class org.openprovenance.model.OPMSerialiser

By default we use a document provided by the DocumentBuilder factory.

defaultNamespace - Static variable in class org.openprovenance.model.OPMSerialiser

Dependencies - Class in org.openprovenance.model

Java class for Dependencies complex type.

Dependencies() - Constructor for class org.openprovenance.model.Dependencies

dependencies - Variable in class org.openprovenance.model.OPMGraph

DependencyRef - Class in org.openprovenance.model

Java class for DependencyRef complex type.

DependencyRef() - Constructor for class org.openprovenance.model.DependencyRef

deserialiseOPMGraph(Element) - Method in class org.openprovenance.model.OPMDeserialiser

deserialiseOPMGraph(File) - Method in class org.openprovenance.model.OPMDeserialiser

deserialiseOPMPrinterConfiguration(File) - Method in class org.openprovenance.model.printer.OPMPrinterConfigDeserialiser

deserialiseOPMPrinterConfiguration(InputStream) - Method in class org.openprovenance.model.printer.OPMPrinterConfigDeserialiser

destroy(List) - Method in class org.openprovenance.model.Normalise

display - Variable in class org.openprovenance.model.printer.AgentMapEntry

display - Variable in class org.openprovenance.model.printer.ArtifactMapEntry

display - Variable in class org.openprovenance.model.printer.ProcessMapEntry

displayArtifactValue - Variable in class org.openprovenance.model.printer.OPMPrinterConfiguration

displayRole(String) - Method in class org.openprovenance.model.OPMToDot

displayValue - Variable in class org.openprovenance.model.printer.AgentMap

displayValue - Variable in class org.openprovenance.model.printer.ArtifactMap

displayValue - Variable in class org.openprovenance.model.printer.ProcessMap

dumpToRDF(File, SesameManager, RDFFormat, Collection<String[]>) - Method in class org.openprovenance.elmo.RepositoryHelper

E

Edge - Interface in org.openprovenance.model

edge - Variable in class org.openprovenance.model.printer.EdgeStyleMap

Edge - Interface in org.openprovenance.rdf

A (causal) relationship is represented by an arc and denotes the presence of a dependency between the source of the arc (the effect) and the destination of the arc (the cause).

edges - Variable in class org.openprovenance.model.printer.OPMPrinterConfiguration

EdgeStyleMap - Class in org.openprovenance.model.printer

Java class for EdgeStyleMap complex type.

EdgeStyleMap() - Constructor for class org.openprovenance.model.printer.EdgeStyleMap

EdgeStyleMapEntry - Class in org.openprovenance.model.printer

Java class for EdgeStyleMapEntry complex type.

EdgeStyleMapEntry() - Constructor for class org.openprovenance.model.printer.EdgeStyleMapEntry

effect - Variable in class org.openprovenance.model.Used

effect - Variable in class org.openprovenance.model.UsedStar

effect - Variable in class org.openprovenance.model.WasControlledBy

effect - Variable in class org.openprovenance.model.WasDerivedFrom

effect - Variable in class org.openprovenance.model.WasDerivedFromStar

effect - Variable in class org.openprovenance.model.WasGeneratedBy

effect - Variable in class org.openprovenance.model.WasGeneratedByStar

effect - Variable in class org.openprovenance.model.WasTriggeredBy

effect - Variable in class org.openprovenance.model.WasTriggeredByStar

effectiveMembership(OPMGraph) - Method in class org.openprovenance.model.OPMUtilities

Returns a graph with the same structure, in which the * effective membership of all nodes has been computed.

EmbeddedAnnotation - Class in org.openprovenance.model

Java class for EmbeddedAnnotation complex type.

EmbeddedAnnotation() - Constructor for class org.openprovenance.model.EmbeddedAnnotation

embedExternalAnnotations(OPMGraph) - Method in class org.openprovenance.model.Normalise

emitAgent(Agent, PrintStream) - Method in class org.openprovenance.model.OPMToDot

emitAnnotation(String, EmbeddedAnnotation, PrintStream) - Method in class org.openprovenance.model.OPMToDot

emitAnnotations(Annotable, PrintStream) - Method in class org.openprovenance.model.OPMToDot

emitArtifact(Artifact, PrintStream) - Method in class org.openprovenance.model.OPMToDot

emitDependency(Edge, PrintStream) - Method in class org.openprovenance.model.OPMToDot

emitEdge(String, String, HashMap<String, String>, PrintStream, boolean) - Method in class org.openprovenance.model.OPMToDot

emitNode(String, HashMap<String, String>, PrintStream) - Method in class org.openprovenance.model.OPMToDot

emitProcess(Process, PrintStream) - Method in class org.openprovenance.model.OPMToDot

emitProperties(StringBuffer, HashMap<String, String>) - Method in class org.openprovenance.model.OPMToDot

encoding - Variable in class org.openprovenance.model.Value

ENCODING_PROPERTY - Static variable in interface org.openprovenance.model.CommonURIs

endTime - Variable in class org.openprovenance.model.WasControlledBy

Entity - Interface in org.openprovenance.rdf

The class of all constituents of an OPM graph.

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.Account

equals(Object) - Method in class org.openprovenance.model.Account

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.AccountRef

equals(Object) - Method in class org.openprovenance.model.AccountRef

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.Accounts

equals(Object) - Method in class org.openprovenance.model.Accounts

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.Agent

equals(Object) - Method in class org.openprovenance.model.Agent

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.AgentRef

equals(Object) - Method in class org.openprovenance.model.AgentRef

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.Agents

equals(Object) - Method in class org.openprovenance.model.Agents

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.Annotation

equals(Object) - Method in class org.openprovenance.model.Annotation

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.AnnotationRef

equals(Object) - Method in class org.openprovenance.model.AnnotationRef

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.Annotations

equals(Object) - Method in class org.openprovenance.model.Annotations

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.Artifact

equals(Object) - Method in class org.openprovenance.model.Artifact

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.ArtifactRef

equals(Object) - Method in class org.openprovenance.model.ArtifactRef

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.Artifacts

equals(Object) - Method in class org.openprovenance.model.Artifacts

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.Dependencies

equals(Object) - Method in class org.openprovenance.model.Dependencies

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.DependencyRef

equals(Object) - Method in class org.openprovenance.model.DependencyRef

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.EmbeddedAnnotation

equals(Object) - Method in class org.openprovenance.model.EmbeddedAnnotation

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.Label

equals(Object) - Method in class org.openprovenance.model.Label

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.OPMGraph

equals(Object) - Method in class org.openprovenance.model.OPMGraph

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.OPMGraphRef

equals(Object) - Method in class org.openprovenance.model.OPMGraphRef

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.OTime

equals(Object) - Method in class org.openprovenance.model.OTime

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.Overlaps

equals(Object) - Method in class org.openprovenance.model.Overlaps

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.PName

equals(Object) - Method in class org.openprovenance.model.PName

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.printer.AccountColorMapEntry

equals(Object) - Method in class org.openprovenance.model.printer.AccountColorMapEntry

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.printer.AccountMap

equals(Object) - Method in class org.openprovenance.model.printer.AccountMap

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.printer.AgentMap

equals(Object) - Method in class org.openprovenance.model.printer.AgentMap

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.printer.AgentMapEntry

equals(Object) - Method in class org.openprovenance.model.printer.AgentMapEntry

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.printer.ArtifactMap

equals(Object) - Method in class org.openprovenance.model.printer.ArtifactMap

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.printer.ArtifactMapEntry

equals(Object) - Method in class org.openprovenance.model.printer.ArtifactMapEntry

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.printer.EdgeStyleMap

equals(Object) - Method in class org.openprovenance.model.printer.EdgeStyleMap

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.printer.EdgeStyleMapEntry

equals(Object) - Method in class org.openprovenance.model.printer.EdgeStyleMapEntry

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.printer.Map

equals(Object) - Method in class org.openprovenance.model.printer.Map

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.printer.MapEntry

equals(Object) - Method in class org.openprovenance.model.printer.MapEntry

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.printer.OPMPrinterConfiguration

equals(Object) - Method in class org.openprovenance.model.printer.OPMPrinterConfiguration

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.printer.ProcessMap

equals(Object) - Method in class org.openprovenance.model.printer.ProcessMap

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.printer.ProcessMapEntry

equals(Object) - Method in class org.openprovenance.model.printer.ProcessMapEntry

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.Process

equals(Object) - Method in class org.openprovenance.model.Process

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.Processes

equals(Object) - Method in class org.openprovenance.model.Processes

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.ProcessRef

equals(Object) - Method in class org.openprovenance.model.ProcessRef

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.Profile

equals(Object) - Method in class org.openprovenance.model.Profile

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.Property

equals(Object) - Method in class org.openprovenance.model.Property

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.Role

equals(Object) - Method in class org.openprovenance.model.Role

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.RoleRef

equals(Object) - Method in class org.openprovenance.model.RoleRef

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.Type

equals(Object) - Method in class org.openprovenance.model.Type

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.Used

equals(Object) - Method in class org.openprovenance.model.Used

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.UsedStar

equals(Object) - Method in class org.openprovenance.model.UsedStar

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.Value

equals(Object) - Method in class org.openprovenance.model.Value

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.WasControlledBy

equals(Object) - Method in class org.openprovenance.model.WasControlledBy

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.WasDerivedFrom

equals(Object) - Method in class org.openprovenance.model.WasDerivedFrom

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.WasDerivedFromStar

equals(Object) - Method in class org.openprovenance.model.WasDerivedFromStar

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.WasGeneratedBy

equals(Object) - Method in class org.openprovenance.model.WasGeneratedBy

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.WasGeneratedByStar

equals(Object) - Method in class org.openprovenance.model.WasGeneratedByStar

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.WasTriggeredBy

equals(Object) - Method in class org.openprovenance.model.WasTriggeredBy

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.WasTriggeredByStar

equals(Object) - Method in class org.openprovenance.model.WasTriggeredByStar

EventEdge - Interface in org.openprovenance.rdf

An EventEdge denotes an Edge associated with a time instant.

exactlyAt - Variable in class org.openprovenance.model.OTime

expandAnnotation(EmbeddedAnnotation) - Method in class org.openprovenance.model.OPMFactory

externalSubject - Variable in class org.openprovenance.model.Annotation

F

filterAnnotation(EmbeddedAnnotation) - Method in class org.openprovenance.model.OPMToDot

filterResourcesByNamespace(List<Resource>, String) - Method in class org.openprovenance.jena.Querier

findMyFacade() - Method in interface org.openprovenance.elmo.HasFacade

findMyFacade() - Method in class org.openprovenance.elmo.RdfAccount

findMyFacade() - Method in class org.openprovenance.elmo.RdfAgent

findMyFacade() - Method in class org.openprovenance.elmo.RdfAnnotation

findMyFacade() - Method in class org.openprovenance.elmo.RdfArtifact

findMyFacade() - Method in class org.openprovenance.elmo.RdfEmbeddedAnnotation

findMyFacade() - Method in class org.openprovenance.elmo.RdfOPMGraph

findMyFacade() - Method in class org.openprovenance.elmo.RdfOTime

findMyFacade() - Method in class org.openprovenance.elmo.RdfProcess

findMyFacade() - Method in class org.openprovenance.elmo.RdfProperty

findMyFacade() - Method in class org.openprovenance.elmo.RdfRole

findMyFacade() - Method in class org.openprovenance.elmo.RdfUsed

findMyFacade() - Method in class org.openprovenance.elmo.RdfValue

findMyFacade() - Method in class org.openprovenance.elmo.RdfWasControlledBy

findMyFacade() - Method in class org.openprovenance.elmo.RdfWasDerivedFrom

findMyFacade() - Method in class org.openprovenance.elmo.RdfWasGeneratedBy

findMyFacade() - Method in class org.openprovenance.elmo.RdfWasTriggeredBy

fromValue(String) - Static method in enum org.openprovenance.profile.collections.TypeURI

G

getAccount() - Method in class org.openprovenance.model.Accounts

Gets the value of the account property.

getAccount() - Method in class org.openprovenance.model.Agent

Gets the value of the account property.

getAccount() - Method in class org.openprovenance.model.Artifact

Gets the value of the account property.

getAccount() - Method in class org.openprovenance.model.EmbeddedAnnotation

Gets the value of the account property.

getAccount() - Method in interface org.openprovenance.model.HasAccounts

getAccount(String) - Method in class org.openprovenance.model.IndexedOPMGraph

getAccount() - Method in class org.openprovenance.model.Overlaps

Gets the value of the account property.

getAccount() - Method in class org.openprovenance.model.printer.AccountMap

Gets the value of the account property.

getAccount() - Method in class org.openprovenance.model.Process

Gets the value of the account property.

getAccount() - Method in class org.openprovenance.model.Used

Gets the value of the account property.

getAccount() - Method in class org.openprovenance.model.UsedStar

Gets the value of the account property.

getAccount() - Method in class org.openprovenance.model.WasControlledBy

Gets the value of the account property.

getAccount() - Method in class org.openprovenance.model.WasDerivedFrom

Gets the value of the account property.

getAccount() - Method in class org.openprovenance.model.WasDerivedFromStar

Gets the value of the account property.

getAccount() - Method in class org.openprovenance.model.WasGeneratedBy

Gets the value of the account property.

getAccount() - Method in class org.openprovenance.model.WasGeneratedByStar

Gets the value of the account property.

getAccount() - Method in class org.openprovenance.model.WasTriggeredBy

Gets the value of the account property.

getAccount() - Method in class org.openprovenance.model.WasTriggeredByStar

Gets the value of the account property.

getAccounts() - Method in class org.openprovenance.elmo.RdfAgent

getAccounts() - Method in class org.openprovenance.elmo.RdfWasDerivedFrom

getAccounts() - Method in class org.openprovenance.elmo.RdfWasTriggeredBy

getAccounts() - Method in class org.openprovenance.model.OPMGraph

Gets the value of the accounts property.

getAccounts() - Method in class org.openprovenance.model.printer.OPMPrinterConfiguration

Gets the value of the accounts property.

getAccounts() - Method in interface org.openprovenance.rdf.AnnotationOrEdgeOrNode

Object Property to express the member of an OPM entity to some Account.

getAgent() - Method in class org.openprovenance.model.Agents

Gets the value of the agent property.

getAgent(String) - Method in class org.openprovenance.model.IndexedOPMGraph

getAgent() - Method in class org.openprovenance.model.printer.AgentMap

Gets the value of the agent property.

getAgents() - Method in class org.openprovenance.jena.Querier

getAgents() - Method in class org.openprovenance.model.OPMGraph

Gets the value of the agents property.

getAgents() - Method in class org.openprovenance.model.printer.OPMPrinterConfiguration

Gets the value of the agents property.

getAgentsAsResources() - Method in class org.openprovenance.jena.Querier

getAnnotation() - Method in class org.openprovenance.model.Account

Gets the value of the annotation property.

getAnnotation() - Method in class org.openprovenance.model.Agent

Gets the value of the annotation property.

getAnnotation() - Method in interface org.openprovenance.model.Annotable

getAnnotation() - Method in class org.openprovenance.model.Annotations

Gets the value of the annotation property.

getAnnotation() - Method in class org.openprovenance.model.Artifact

Gets the value of the annotation property.

getAnnotation() - Method in class org.openprovenance.model.EmbeddedAnnotation

Gets the value of the annotation property.

getAnnotation() - Method in class org.openprovenance.model.OPMGraph

Gets the value of the annotation property.

getAnnotation() - Method in class org.openprovenance.model.Process

Gets the value of the annotation property.

getAnnotation() - Method in class org.openprovenance.model.Role

Gets the value of the annotation property.

getAnnotation() - Method in class org.openprovenance.model.Used

Gets the value of the annotation property.

getAnnotation() - Method in class org.openprovenance.model.UsedStar

Gets the value of the annotation property.

getAnnotation() - Method in class org.openprovenance.model.WasControlledBy

Gets the value of the annotation property.

getAnnotation() - Method in class org.openprovenance.model.WasDerivedFrom

Gets the value of the annotation property.

getAnnotation() - Method in class org.openprovenance.model.WasDerivedFromStar

Gets the value of the annotation property.

getAnnotation() - Method in class org.openprovenance.model.WasGeneratedBy

Gets the value of the annotation property.

getAnnotation() - Method in class org.openprovenance.model.WasGeneratedByStar

Gets the value of the annotation property.

getAnnotation() - Method in class org.openprovenance.model.WasTriggeredBy

Gets the value of the annotation property.

getAnnotation() - Method in class org.openprovenance.model.WasTriggeredByStar

Gets the value of the annotation property.

getAnnotations() - Method in class org.openprovenance.elmo.RdfAgent

getAnnotations() - Method in class org.openprovenance.elmo.RdfRole

getAnnotations() - Method in class org.openprovenance.elmo.RdfWasDerivedFrom

getAnnotations() - Method in class org.openprovenance.elmo.RdfWasTriggeredBy

getAnnotations() - Method in class org.openprovenance.model.OPMGraph

Gets the value of the annotations property.

getAnnotations() - Method in interface org.openprovenance.rdf.Annotable

Object property to associate an Annotable entity and an Annotation.

getArtifact() - Method in class org.openprovenance.model.Artifacts

Gets the value of the artifact property.

getArtifact(String) - Method in class org.openprovenance.model.IndexedOPMGraph

getArtifact() - Method in class org.openprovenance.model.printer.ArtifactMap

Gets the value of the artifact property.

getArtifacts() - Method in class org.openprovenance.jena.Querier

getArtifacts() - Method in class org.openprovenance.model.OPMGraph

Gets the value of the artifacts property.

getArtifacts() - Method in class org.openprovenance.model.printer.OPMPrinterConfiguration

Gets the value of the artifacts property.

getArtifactsAsResources() - Method in class org.openprovenance.jena.Querier

getAsLiterals(ResultSet, String) - Method in class org.openprovenance.jena.Querier

getAsResources(ResultSet, String) - Method in class org.openprovenance.jena.Querier

getAvalues() - Method in interface org.openprovenance.rdf.Artifact

Denotes a serialization of an application value associated with an Artifact.

getCause() - Method in interface org.openprovenance.model.Edge

getCause() - Method in class org.openprovenance.model.Used

Gets the value of the cause property.

getCause() - Method in class org.openprovenance.model.UsedStar

Gets the value of the cause property.

getCause() - Method in class org.openprovenance.model.WasControlledBy

Gets the value of the cause property.

getCause() - Method in class org.openprovenance.model.WasDerivedFrom

Gets the value of the cause property.

getCause() - Method in class org.openprovenance.model.WasDerivedFromStar

Gets the value of the cause property.

getCause() - Method in class org.openprovenance.model.WasGeneratedBy

Gets the value of the cause property.

getCause() - Method in class org.openprovenance.model.WasGeneratedByStar

Gets the value of the cause property.

getCause() - Method in class org.openprovenance.model.WasTriggeredBy

Gets the value of the cause property.

getCause() - Method in class org.openprovenance.model.WasTriggeredByStar

Gets the value of the cause property.

getCause() - Method in interface org.openprovenance.rdf.Edge

The cause of an Edge.

getCauseUsed() - Method in interface org.openprovenance.rdf.Used

The cause of a Used edge.

getCauseWasControlledBy() - Method in interface org.openprovenance.rdf.WasControlledBy

The cause of a WasControlledBy edge.

getCauseWasDerivedFrom() - Method in interface org.openprovenance.rdf.WasDerivedFrom

The cause of a WasDerivedFrom edge.

getCauseWasDerivedFromArtifacts(String) - Method in class org.openprovenance.jena.Querier

getCauseWasGeneratedBy() - Method in interface org.openprovenance.rdf.WasGeneratedBy

The cause of a WasGeneratedBy edge.

getCauseWasTriggeredBy() - Method in interface org.openprovenance.rdf.WasTriggeredBy

The cause of a WasTriggeredBy edge.

getColor() - Method in class org.openprovenance.model.printer.AccountColorMapEntry

Gets the value of the color property.

getContent() - Method in class org.openprovenance.model.Value

Gets the value of the content property.

getContent() - Method in interface org.openprovenance.rdf.AValue

Content of the serial representation of Artifact.

getContributors() - Method in interface org.openprovenance.dc.DcResource

getCreators() - Method in interface org.openprovenance.dc.DcResource

getDatapropertyAbbreviation() - Method in interface org.openprovenance.rdf.Annotable

The OPM Ontology offers several data properties that are abbreviation of common properties defined by OPM.

getDates() - Method in interface org.openprovenance.dc.DcResource

getDefault() - Method in class org.openprovenance.model.printer.EdgeStyleMap

Gets the value of the default property.

getDefaultAccount() - Method in class org.openprovenance.model.printer.AccountMap

Gets the value of the defaultAccount property.

getDefaultColor() - Method in class org.openprovenance.model.printer.AccountMap

Gets the value of the defaultColor property.

getDependencies() - Method in class org.openprovenance.model.OPMGraph

Gets the value of the dependencies property.

getDerivedFromArtifacts(String) - Method in class org.openprovenance.jena.Querier

getDerivedFromArtifactsAsResources(String) - Method in class org.openprovenance.jena.Querier

getDerivedFromStarArtifacts(String) - Method in class org.openprovenance.jena.Querier

getDerivedFromStarArtifactsAsResources(String) - Method in class org.openprovenance.jena.Querier

getDeserialiser() - Method in class org.openprovenance.model.OPMToDot

getDisplay() - Method in class org.openprovenance.model.printer.AgentMapEntry

Gets the value of the display property.

getDisplay() - Method in class org.openprovenance.model.printer.ArtifactMapEntry

Gets the value of the display property.

getDisplay() - Method in class org.openprovenance.model.printer.ProcessMapEntry

Gets the value of the display property.

getDocument() - Method in class org.openprovenance.elmo.XMLLiteral

getEdge() - Method in class org.openprovenance.model.printer.EdgeStyleMap

Gets the value of the edge property.

getEdgePrintRole(Edge) - Method in class org.openprovenance.model.OPMToDot

getEdgeRole() - Method in class org.openprovenance.elmo.RdfWasTriggeredBy

getEdges(OPMGraph) - Method in class org.openprovenance.model.OPMUtilities

getEdges() - Method in class org.openprovenance.model.printer.OPMPrinterConfiguration

Gets the value of the edges property.

getEdgeStyle(Edge) - Method in class org.openprovenance.model.OPMToDot

getEffect() - Method in interface org.openprovenance.model.Edge

getEffect() - Method in class org.openprovenance.model.Used

Gets the value of the effect property.

getEffect() - Method in class org.openprovenance.model.UsedStar

Gets the value of the effect property.

getEffect() - Method in class org.openprovenance.model.WasControlledBy

Gets the value of the effect property.

getEffect() - Method in class org.openprovenance.model.WasDerivedFrom

Gets the value of the effect property.

getEffect() - Method in class org.openprovenance.model.WasDerivedFromStar

Gets the value of the effect property.

getEffect() - Method in class org.openprovenance.model.WasGeneratedBy

Gets the value of the effect property.

getEffect() - Method in class org.openprovenance.model.WasGeneratedByStar

Gets the value of the effect property.

getEffect() - Method in class org.openprovenance.model.WasTriggeredBy

Gets the value of the effect property.

getEffect() - Method in class org.openprovenance.model.WasTriggeredByStar

Gets the value of the effect property.

getEffect() - Method in interface org.openprovenance.rdf.Edge

The effect of an Edge.

getEffectInverse() - Method in interface org.openprovenance.rdf.Node

Convenience class introduced to describe the inverse of an effect.

getEffectUsed() - Method in interface org.openprovenance.rdf.Used

The effect of a Used edge.

getEffectUsedInverse() - Method in interface org.openprovenance.rdf.Process

The cause of a Process by means of a Used edge.

getEffectWasControlledBy() - Method in interface org.openprovenance.rdf.WasControlledBy

The effect of a WasControlledBy edge.

getEffectWasControlledByInverse() - Method in interface org.openprovenance.rdf.Process

The cause of a Process by means of a WasControlledBy edge.

getEffectWasDerivedFrom() - Method in interface org.openprovenance.rdf.WasDerivedFrom

The effect of a WasDerivedFrom edge.

getEffectWasDerivedFromInverse() - Method in interface org.openprovenance.rdf.Artifact

The cause of an Artifact by means of a WasDerivedFrom edge.

getEffectWasGeneratedBy() - Method in interface org.openprovenance.rdf.WasGeneratedBy

The effect of a WasGeneratedBy edge.

getEffectWasGeneratedByInverse() - Method in interface org.openprovenance.rdf.Artifact

The cause of an Artifact by means of a WasGeneratedBy edge.

getEffectWasTriggeredBy() - Method in interface org.openprovenance.rdf.WasTriggeredBy

The effect of a WasTriggeredBy edge.

getEffectWasTriggeredByInverse() - Method in interface org.openprovenance.rdf.Process

The cause of a Process by means of a WasTriggeredBy edge.

getEncoding(EmbeddedAnnotation) - Method in class org.openprovenance.model.OPMFactory

getEncoding() - Method in class org.openprovenance.model.Value

Gets the value of the encoding property.

getEncoding() - Method in interface org.openprovenance.rdf.AValue

Denotes how a serialization was constructed.

getEndTime() - Method in class org.openprovenance.model.WasControlledBy

Gets the value of the endTime property.

getEndTime() - Method in interface org.openprovenance.rdf.WasControlledBy

The time at which the agent ended controlling a process.

getExactlyAt() - Method in class org.openprovenance.model.OTime

Gets the value of the exactlyAt property.

getExactlyAt() - Method in interface org.openprovenance.rdf.OTime

The event occurred exactly at this time.

getExternalSubject() - Method in class org.openprovenance.model.Annotation

Gets the value of the externalSubject property.

getFactory() - Static method in class org.openprovenance.model.OPMFactory

getFormats() - Method in interface org.openprovenance.dc.DcResource

getFromRegisters(String) - Method in class org.openprovenance.elmo.RdfOPMFactory

getGeneratedArtifacts(String) - Method in class org.openprovenance.jena.Querier

getGeneratedArtifactsAndRoles(String) - Method in class org.openprovenance.jena.Querier

getGeneratedArtifactsAsResources(String) - Method in class org.openprovenance.jena.Querier

getGeneratedRole() - Method in class org.openprovenance.elmo.RdfWasTriggeredBy

getGraphName() - Method in class org.openprovenance.model.printer.OPMPrinterConfiguration

Gets the value of the graphName property.

getHasAccount() - Method in interface org.openprovenance.rdf.OPMGraph

Property that denotes the constituency relationship between an OPM graph and an account, meaning that the object of this property is an account of the subject.

getHasAgent() - Method in interface org.openprovenance.rdf.OPMGraph

Property that denotes the constituency relationship between an OPM graph and an agent, meaning that the object of this property is an agent of the subject.

getHasArtifact() - Method in interface org.openprovenance.rdf.OPMGraph

Property that denotes the constituency relationship between an OPM graph and an artifact, meaning that the object of this property is an artifact of the subject.

getHasConstituent() - Method in interface org.openprovenance.rdf.OPMGraph

(Abstract) Property that denotes the constituency relationship between an OPM graph and one of its constituent entity, meaning that the object of this property is a constituent of the subject.

getHasDependency() - Method in interface org.openprovenance.rdf.OPMGraph

Property that denotes the constituency relationship between an OPM graph and an edge, meaning that the object of this property is an edge of the subject.

getHasProcess() - Method in interface org.openprovenance.rdf.OPMGraph

Property that denotes the constituency relationship between an OPM graph and a process, meaning that the object of this property is a process of the subject.

getId() - Method in class org.openprovenance.model.Account

Gets the value of the id property.

getId() - Method in class org.openprovenance.model.Agent

Gets the value of the id property.

getId() - Method in class org.openprovenance.model.Artifact

Gets the value of the id property.

getId() - Method in class org.openprovenance.model.EmbeddedAnnotation

Gets the value of the id property.

getId() - Method in interface org.openprovenance.model.Identifiable

getId() - Method in class org.openprovenance.model.OPMGraph

Gets the value of the id property.

getId() - Method in class org.openprovenance.model.Process

Gets the value of the id property.

getId() - Method in class org.openprovenance.model.Role

Gets the value of the id property.

getId() - Method in class org.openprovenance.model.Used

Gets the value of the id property.

getId() - Method in class org.openprovenance.model.UsedStar

Gets the value of the id property.

getId() - Method in class org.openprovenance.model.WasControlledBy

Gets the value of the id property.

getId() - Method in class org.openprovenance.model.WasDerivedFrom

Gets the value of the id property.

getId() - Method in class org.openprovenance.model.WasDerivedFromStar

Gets the value of the id property.

getId() - Method in class org.openprovenance.model.WasGeneratedBy

Gets the value of the id property.

getId() - Method in class org.openprovenance.model.WasGeneratedByStar

Gets the value of the id property.

getId() - Method in class org.openprovenance.model.WasTriggeredBy

Gets the value of the id property.

getId() - Method in class org.openprovenance.model.WasTriggeredByStar

Gets the value of the id property.

getInputArtifacts() - Method in class org.openprovenance.jena.Querier

getInputArtifactsAsResources(String) - Method in class org.openprovenance.jena.Querier

getKey() - Method in class org.openprovenance.model.Property

Gets the value of the key property.

getKey() - Method in interface org.openprovenance.rdf.Property

The key of a Property.

getLabel(EmbeddedAnnotation) - Method in class org.openprovenance.model.OPMFactory

getLabel(List<JAXBElement<? extends EmbeddedAnnotation>>) - Method in class org.openprovenance.model.OPMFactory

Return the value of the label property in the first annotation.

getLabel(Annotable) - Method in class org.openprovenance.model.OPMFactory

Generic accessor for annotable entities.

getLabels(List<JAXBElement<? extends EmbeddedAnnotation>>) - Method in class org.openprovenance.model.OPMFactory

Return the value of the label property.

getLabels() - Method in interface org.openprovenance.rdf.Annotable

This property provides a human-readable version of an OPM entity.

getLocalSubject() - Method in class org.openprovenance.model.Annotation

Gets the value of the localSubject property.

getMap() - Method in class org.openprovenance.model.printer.Map

Gets the value of the map property.

getModel() - Method in class org.openprovenance.jena.TripleStore

getName() - Method in class org.openprovenance.model.printer.AccountColorMapEntry

Gets the value of the name property.

getName() - Method in class org.openprovenance.model.printer.MapEntry

Gets the value of the name property.

getNodes(OPMGraph) - Method in class org.openprovenance.model.OPMUtilities

getNoEarlierThan() - Method in class org.openprovenance.model.OTime

Gets the value of the noEarlierThan property.

getNoEarlierThan() - Method in interface org.openprovenance.rdf.OTime

the event occurred no earlier than this time

getNoLaterThan() - Method in class org.openprovenance.model.OTime

Gets the value of the noLaterThan property.

getNoLaterThan() - Method in interface org.openprovenance.rdf.OTime

the event occurred no later than this time

getObjectFactory() - Method in class org.openprovenance.model.OPMFactory

getOverlaps() - Method in class org.openprovenance.model.Accounts

Gets the value of the overlaps property.

getPackageList() - Method in class org.openprovenance.model.OPMFactory

getPname(EmbeddedAnnotation) - Method in class org.openprovenance.model.OPMFactory

getPname(List<JAXBElement<? extends EmbeddedAnnotation>>) - Method in class org.openprovenance.model.OPMFactory

Return the value of the pname property in the first annotation.

getPname(Annotable) - Method in class org.openprovenance.model.OPMFactory

Generic accessor for annotable entities.

getPnames(List<JAXBElement<? extends EmbeddedAnnotation>>) - Method in class org.openprovenance.model.OPMFactory

Return the value of the pname property.

getPnames() - Method in interface org.openprovenance.rdf.Annotable

The persistent name of an entity.

getPreDeclaredNamespaceUris() - Method in class org.openprovenance.model.NamespacePrefixMapper

Returns a list of namespace URIs that should be declared at the root element.

getPreferredPrefix(String, String, boolean) - Method in class org.openprovenance.model.NamespacePrefixMapper

Returns a preferred prefix for the given namespace URI.

getProcess(String) - Method in class org.openprovenance.model.IndexedOPMGraph

getProcess() - Method in class org.openprovenance.model.printer.ProcessMap

Gets the value of the process property.

getProcess() - Method in class org.openprovenance.model.Processes

Gets the value of the process property.

getProcesses() - Method in class org.openprovenance.jena.Querier

getProcesses() - Method in class org.openprovenance.model.OPMGraph

Gets the value of the processes property.

getProcesses() - Method in class org.openprovenance.model.printer.OPMPrinterConfiguration

Gets the value of the processes property.

getProcessesAsResources() - Method in class org.openprovenance.jena.Querier

getProcessesAsResources(String) - Method in class org.openprovenance.jena.Querier

getProfile(EmbeddedAnnotation) - Method in class org.openprovenance.model.OPMFactory

getProfile(List<JAXBElement<? extends EmbeddedAnnotation>>) - Method in class org.openprovenance.model.OPMFactory

Return the value of the profile property in the first annotation.

getProfile(Annotable) - Method in class org.openprovenance.model.OPMFactory

Generic accessor for annotable entities.

getProfiles(List<JAXBElement<? extends EmbeddedAnnotation>>) - Method in class org.openprovenance.model.OPMFactory

Return the value of the profile property.

getProfiles() - Method in interface org.openprovenance.rdf.Annotable

This property applies to an OPM graph and denotes a profile that is supported by that graph.

getProperties() - Method in interface org.openprovenance.rdf.Annotation

Object Property that associates an Annotation instance with a (set of) Propery(ies).

getProperty() - Method in class org.openprovenance.model.EmbeddedAnnotation

Gets the value of the property property.

getQName() - Method in interface org.openprovenance.elmo.HasFacade

getQName() - Method in class org.openprovenance.elmo.RdfAccount

getQName() - Method in class org.openprovenance.elmo.RdfAgent

getQName() - Method in class org.openprovenance.elmo.RdfAnnotation

getQName() - Method in class org.openprovenance.elmo.RdfArtifact

getQName() - Method in class org.openprovenance.elmo.RdfEmbeddedAnnotation

getQName() - Method in class org.openprovenance.elmo.RdfOPMGraph

getQName() - Method in class org.openprovenance.elmo.RdfOTime

getQName() - Method in class org.openprovenance.elmo.RdfProcess

getQName() - Method in class org.openprovenance.elmo.RdfProperty

getQName() - Method in class org.openprovenance.elmo.RdfRole

getQName() - Method in class org.openprovenance.elmo.RdfUsed

getQName() - Method in class org.openprovenance.elmo.RdfValue

getQName() - Method in class org.openprovenance.elmo.RdfWasControlledBy

getQName() - Method in class org.openprovenance.elmo.RdfWasDerivedFrom

getQName() - Method in class org.openprovenance.elmo.RdfWasGeneratedBy

getQName() - Method in class org.openprovenance.elmo.RdfWasTriggeredBy

getQuerier() - Method in class org.openprovenance.jena.TripleStore

getRef() - Method in class org.openprovenance.model.AccountRef

Gets the value of the ref property.

getRef() - Method in class org.openprovenance.model.AgentRef

Gets the value of the ref property.

getRef() - Method in class org.openprovenance.model.AnnotationRef

Gets the value of the ref property.

getRef() - Method in class org.openprovenance.model.ArtifactRef

Gets the value of the ref property.

getRef() - Method in class org.openprovenance.model.DependencyRef

Gets the value of the ref property.

getRef() - Method in class org.openprovenance.model.OPMGraphRef

Gets the value of the ref property.

getRef() - Method in class org.openprovenance.model.ProcessRef

Gets the value of the ref property.

getRef() - Method in interface org.openprovenance.model.Ref

getRef() - Method in class org.openprovenance.model.RoleRef

Gets the value of the ref property.

getRole(Edge) - Method in class org.openprovenance.model.OPMFactory

getRole() - Method in class org.openprovenance.model.Used

Gets the value of the role property.

getRole() - Method in class org.openprovenance.model.WasControlledBy

Gets the value of the role property.

getRole() - Method in class org.openprovenance.model.WasGeneratedBy

Gets the value of the role property.

getRole() - Method in interface org.openprovenance.rdf.UsedOrWasControlledByOrWasGeneratedBy

The role of an edge.

getStartTime() - Method in class org.openprovenance.model.WasControlledBy

Gets the value of the startTime property.

getStartTime() - Method in interface org.openprovenance.rdf.WasControlledBy

The time at which the agent began controlling a process.

getStyle() - Method in class org.openprovenance.model.printer.EdgeStyleMapEntry

Gets the value of the style property.

getTermsCreated() - Method in interface org.openprovenance.dc.DcResource

getTermsModified() - Method in interface org.openprovenance.dc.DcResource

getTermsTitle() - Method in interface org.openprovenance.dc.DcResource

getThreadOPMDeserialiser() - Static method in class org.openprovenance.model.OPMDeserialiser

getThreadOPMPrinterConfigDeserialiser() - Static method in class org.openprovenance.model.printer.OPMPrinterConfigDeserialiser

getThreadOPMSerialiser() - Static method in class org.openprovenance.model.OPMSerialiser

getTime() - Method in class org.openprovenance.model.Used

Gets the value of the time property.

getTime() - Method in class org.openprovenance.model.WasDerivedFrom

Gets the value of the time property.

getTime() - Method in class org.openprovenance.model.WasGeneratedBy

Gets the value of the time property.

getTime() - Method in class org.openprovenance.model.WasTriggeredBy

Gets the value of the time property.

getTime() - Method in interface org.openprovenance.rdf.EventEdge

A piece of timing information associated with an EventEdge.

getTitles() - Method in interface org.openprovenance.dc.DcResource

getType(EmbeddedAnnotation) - Method in class org.openprovenance.model.OPMFactory

getType(List<JAXBElement<? extends EmbeddedAnnotation>>) - Method in class org.openprovenance.model.OPMFactory

Return the value of the type property in the first annotation.

getType(Annotable) - Method in class org.openprovenance.model.OPMFactory

Generic accessor for annotable entities.

getType() - Method in class org.openprovenance.model.printer.EdgeStyleMapEntry

Gets the value of the type property.

getTypes(List<JAXBElement<? extends EmbeddedAnnotation>>) - Method in class org.openprovenance.model.OPMFactory

Return the value of the type property.

getTypes() - Method in interface org.openprovenance.rdf.Annotable

The subtype of an entity.

getUsed() - Method in class org.openprovenance.model.IndexedOPMGraph

Return all used edges for this graph.

getUsed(Process) - Method in class org.openprovenance.model.IndexedOPMGraph

Return all used edges with process p as an effect.

getUsed(Artifact) - Method in class org.openprovenance.model.IndexedOPMGraph

Return all used edges with artifact a as a cause.

getUsed() - Method in interface org.openprovenance.rdf.Process

getUsedArtifacts(String) - Method in class org.openprovenance.jena.Querier

getUsedArtifactsAndRoles(String) - Method in class org.openprovenance.jena.Querier

getUsedArtifactsAsResources(String) - Method in class org.openprovenance.jena.Querier

getUsedOrWasGeneratedByOrWasTriggeredBy() - Method in class org.openprovenance.model.Dependencies

Gets the value of the usedOrWasGeneratedByOrWasTriggeredBy property.

getUsedStar() - Method in interface org.openprovenance.rdf.Process

A multi-step used property.

getUsedStarArtifacts(String) - Method in class org.openprovenance.jena.Querier

getUsedStarArtifactsAsResources(String) - Method in class org.openprovenance.jena.Querier

getValue() - Method in class org.openprovenance.model.Label

Gets the value of the value property.

getValue(EmbeddedAnnotation) - Method in class org.openprovenance.model.OPMFactory

getValue(List<JAXBElement<? extends EmbeddedAnnotation>>) - Method in class org.openprovenance.model.OPMFactory

Return the value of the value property in the first annotation.

getValue() - Method in class org.openprovenance.model.PName

Gets the value of the value property.

getValue() - Method in class org.openprovenance.model.printer.AgentMapEntry

Gets the value of the value property.

getValue() - Method in class org.openprovenance.model.printer.ArtifactMapEntry

Gets the value of the value property.

getValue() - Method in class org.openprovenance.model.printer.MapEntry

Gets the value of the value property.

getValue() - Method in class org.openprovenance.model.printer.ProcessMapEntry

Gets the value of the value property.

getValue() - Method in class org.openprovenance.model.Profile

Gets the value of the value property.

getValue() - Method in class org.openprovenance.model.Property

Gets the value of the value property.

getValue() - Method in class org.openprovenance.model.Role

Gets the value of the value property.

getValue() - Method in class org.openprovenance.model.Type

Gets the value of the value property.

getValue() - Method in interface org.openprovenance.rdf.PropertyOrRole

the value of a role or a property

getValues(List<JAXBElement<? extends EmbeddedAnnotation>>) - Method in class org.openprovenance.model.OPMFactory

Return the value of the value property.

getVoidExampleResource() - Method in interface org.openprovenance.dc.DcResource

getWasControlledBy() - Method in class org.openprovenance.model.IndexedOPMGraph

Return all WasControlledBy edges for this graph.

getWasControlledBy(Process) - Method in class org.openprovenance.model.IndexedOPMGraph

Return all WasControlledBy edges with process p as an effect.

getWasControlledBy(Agent) - Method in class org.openprovenance.model.IndexedOPMGraph

Return all WasControlledBy edges with artifact a as a cause.

getWasDerivedFrom() - Method in class org.openprovenance.model.IndexedOPMGraph

Return all WasDerivedFrom edges for this graph.

getWasDerivedFrom() - Method in interface org.openprovenance.rdf.Artifact

getWasDerivedFromStar() - Method in interface org.openprovenance.rdf.Artifact

the transitive closure of wasDerivedFrom

getWasDerivedFromWithCause(Artifact) - Method in class org.openprovenance.model.IndexedOPMGraph

Return all WasDerivedFrom edges with artifact a as a cause.

getWasDerivedFromWithEffect(Artifact) - Method in class org.openprovenance.model.IndexedOPMGraph

Return all WasDerivedFrom edges with artifact a as an effect .

getWasGeneratedBy() - Method in class org.openprovenance.model.IndexedOPMGraph

Return all WasGeneratedBy edges for this graph.

getWasGeneratedBy(Process) - Method in class org.openprovenance.model.IndexedOPMGraph

Return all WasGeneratedBy edges with process p as an effect.

getWasGeneratedBy(Artifact) - Method in class org.openprovenance.model.IndexedOPMGraph

Return all WasGeneratedBy edges with artifact a as a cause.

getWasGeneratedBy() - Method in interface org.openprovenance.rdf.Artifact

getWasGeneratedByStar() - Method in interface org.openprovenance.rdf.Artifact

A multi-step wasGeneratedBy edge.

getWasTriggeredBy() - Method in interface org.openprovenance.dc.DcResource

getWasTriggeredBy() - Method in class org.openprovenance.model.IndexedOPMGraph

Return all WasTriggeredBy edges for this graph.

getWasTriggeredByWithCause(Process) - Method in class org.openprovenance.model.IndexedOPMGraph

Return all WasTriggeredBy edges with process p as a cause.

getWasTriggeredByWithEffect(Process) - Method in class org.openprovenance.model.IndexedOPMGraph

Return all WasTriggeredBy edges with process a as an effect.

graphName - Variable in class org.openprovenance.model.printer.OPMPrinterConfiguration

H

HasAccounts - Interface in org.openprovenance.model

HasFacade<TYPE> - Interface in org.openprovenance.elmo

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.Account

hashCode() - Method in class org.openprovenance.model.Account

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.AccountRef

hashCode() - Method in class org.openprovenance.model.AccountRef

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.Accounts

hashCode() - Method in class org.openprovenance.model.Accounts

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.Agent

hashCode() - Method in class org.openprovenance.model.Agent

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.AgentRef

hashCode() - Method in class org.openprovenance.model.AgentRef

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.Agents

hashCode() - Method in class org.openprovenance.model.Agents

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.Annotation

hashCode() - Method in class org.openprovenance.model.Annotation

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.AnnotationRef

hashCode() - Method in class org.openprovenance.model.AnnotationRef

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.Annotations

hashCode() - Method in class org.openprovenance.model.Annotations

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.Artifact

hashCode() - Method in class org.openprovenance.model.Artifact

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.ArtifactRef

hashCode() - Method in class org.openprovenance.model.ArtifactRef

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.Artifacts

hashCode() - Method in class org.openprovenance.model.Artifacts

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.Dependencies

hashCode() - Method in class org.openprovenance.model.Dependencies

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.DependencyRef

hashCode() - Method in class org.openprovenance.model.DependencyRef

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.EmbeddedAnnotation

hashCode() - Method in class org.openprovenance.model.EmbeddedAnnotation

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.Label

hashCode() - Method in class org.openprovenance.model.Label

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.OPMGraph

hashCode() - Method in class org.openprovenance.model.OPMGraph

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.OPMGraphRef

hashCode() - Method in class org.openprovenance.model.OPMGraphRef

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.OTime

hashCode() - Method in class org.openprovenance.model.OTime

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.Overlaps

hashCode() - Method in class org.openprovenance.model.Overlaps

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.PName

hashCode() - Method in class org.openprovenance.model.PName

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.printer.AccountColorMapEntry

hashCode() - Method in class org.openprovenance.model.printer.AccountColorMapEntry

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.printer.AccountMap

hashCode() - Method in class org.openprovenance.model.printer.AccountMap

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.printer.AgentMap

hashCode() - Method in class org.openprovenance.model.printer.AgentMap

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.printer.AgentMapEntry

hashCode() - Method in class org.openprovenance.model.printer.AgentMapEntry

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.printer.ArtifactMap

hashCode() - Method in class org.openprovenance.model.printer.ArtifactMap

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.printer.ArtifactMapEntry

hashCode() - Method in class org.openprovenance.model.printer.ArtifactMapEntry

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.printer.EdgeStyleMap

hashCode() - Method in class org.openprovenance.model.printer.EdgeStyleMap

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.printer.EdgeStyleMapEntry

hashCode() - Method in class org.openprovenance.model.printer.EdgeStyleMapEntry

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.printer.Map

hashCode() - Method in class org.openprovenance.model.printer.Map

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.printer.MapEntry

hashCode() - Method in class org.openprovenance.model.printer.MapEntry

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.printer.OPMPrinterConfiguration

hashCode() - Method in class org.openprovenance.model.printer.OPMPrinterConfiguration

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.printer.ProcessMap

hashCode() - Method in class org.openprovenance.model.printer.ProcessMap

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.printer.ProcessMapEntry

hashCode() - Method in class org.openprovenance.model.printer.ProcessMapEntry

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.Process

hashCode() - Method in class org.openprovenance.model.Process

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.Processes

hashCode() - Method in class org.openprovenance.model.Processes

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.ProcessRef

hashCode() - Method in class org.openprovenance.model.ProcessRef

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.Profile

hashCode() - Method in class org.openprovenance.model.Profile

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.Property

hashCode() - Method in class org.openprovenance.model.Property

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.Role

hashCode() - Method in class org.openprovenance.model.Role

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.RoleRef

hashCode() - Method in class org.openprovenance.model.RoleRef

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.Type

hashCode() - Method in class org.openprovenance.model.Type

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.Used

hashCode() - Method in class org.openprovenance.model.Used

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.UsedStar

hashCode() - Method in class org.openprovenance.model.UsedStar

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.Value

hashCode() - Method in class org.openprovenance.model.Value

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.WasControlledBy

hashCode() - Method in class org.openprovenance.model.WasControlledBy

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.WasDerivedFrom

hashCode() - Method in class org.openprovenance.model.WasDerivedFrom

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.WasDerivedFromStar

hashCode() - Method in class org.openprovenance.model.WasDerivedFromStar

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.WasGeneratedBy

hashCode() - Method in class org.openprovenance.model.WasGeneratedBy

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.WasGeneratedByStar

hashCode() - Method in class org.openprovenance.model.WasGeneratedByStar

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.WasTriggeredBy

hashCode() - Method in class org.openprovenance.model.WasTriggeredBy

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.WasTriggeredByStar

hashCode() - Method in class org.openprovenance.model.WasTriggeredByStar

I

id - Variable in class org.openprovenance.model.Account

id - Variable in class org.openprovenance.model.Agent

id - Variable in class org.openprovenance.model.Artifact

id - Variable in class org.openprovenance.model.EmbeddedAnnotation

id - Variable in class org.openprovenance.model.OPMGraph

id - Variable in class org.openprovenance.model.Process

id - Variable in class org.openprovenance.model.Role

id - Variable in class org.openprovenance.model.Used

id - Variable in class org.openprovenance.model.UsedStar

id - Variable in class org.openprovenance.model.WasControlledBy

id - Variable in class org.openprovenance.model.WasDerivedFrom

id - Variable in class org.openprovenance.model.WasDerivedFromStar

id - Variable in class org.openprovenance.model.WasGeneratedBy

id - Variable in class org.openprovenance.model.WasGeneratedByStar

id - Variable in class org.openprovenance.model.WasTriggeredBy

id - Variable in class org.openprovenance.model.WasTriggeredByStar

Identifiable - Interface in org.openprovenance.model

IndexedOPMGraph - Class in org.openprovenance.model

This class provides a set of indexes over information contained in an OPMGraph, facilitating its navigation.

IndexedOPMGraph(OPMFactory, OPMGraph) - Constructor for class org.openprovenance.model.IndexedOPMGraph

init(String) - Method in class org.openprovenance.model.OPMToDot

init(InputStream) - Method in class org.openprovenance.model.OPMToDot

init(OPMPrinterConfiguration) - Method in class org.openprovenance.model.OPMToDot

intersection(OPMGraph, OPMGraph) - Method in class org.openprovenance.model.OPMUtilities

isColoredAsAccount() - Method in class org.openprovenance.model.printer.AgentMap

Gets the value of the coloredAsAccount property.

isColoredAsAccount() - Method in class org.openprovenance.model.printer.ArtifactMap

Gets the value of the coloredAsAccount property.

isColoredAsAccount() - Method in class org.openprovenance.model.printer.ProcessMap

Gets the value of the coloredAsAccount property.

isDisplayArtifactValue() - Method in class org.openprovenance.model.printer.OPMPrinterConfiguration

Gets the value of the displayArtifactValue property.

isDisplayValue() - Method in class org.openprovenance.model.printer.AgentMap

Gets the value of the displayValue property.

isDisplayValue() - Method in class org.openprovenance.model.printer.ArtifactMap

Gets the value of the displayValue property.

isDisplayValue() - Method in class org.openprovenance.model.printer.ProcessMap

Gets the value of the displayValue property.

isPrintRole() - Method in class org.openprovenance.model.printer.EdgeStyleMapEntry

Gets the value of the printRole property.

J

jc - Static variable in class org.openprovenance.model.OPMDeserialiser

jc - Variable in class org.openprovenance.model.OPMSerialiser

jc - Static variable in class org.openprovenance.model.printer.OPMPrinterConfigDeserialiser

K

key - Variable in class org.openprovenance.model.Property

L

Label - Class in org.openprovenance.model

Java class for Label complex type.

Label() - Constructor for class org.openprovenance.model.Label

LABEL_PROPERTY - Static variable in interface org.openprovenance.model.CommonURIs

legalAccount(OPMGraph) - Method in class org.openprovenance.model.OPMUtilities

loadOPMOOntology() - Method in class org.openprovenance.jena.TripleStore

loadOPMVOntology() - Method in class org.openprovenance.jena.TripleStore

localSubject - Variable in class org.openprovenance.model.Annotation

M

main(String[]) - Static method in class org.openprovenance.elmo.RepositoryHelper

main(String[]) - Static method in class org.openprovenance.model.OPMDeserialiser

main(String[]) - Static method in class org.openprovenance.model.OPMToDot

Map - Class in org.openprovenance.model.printer

Java class for Map complex type.

Map() - Constructor for class org.openprovenance.model.printer.Map

map - Variable in class org.openprovenance.model.printer.Map

MapEntry - Class in org.openprovenance.model.printer

Java class for MapEntry complex type.

MapEntry() - Constructor for class org.openprovenance.model.printer.MapEntry

N

name - Variable in class org.openprovenance.model.printer.AccountColorMapEntry

name - Variable in class org.openprovenance.model.printer.MapEntry

NamespacePrefixMapper - Class in org.openprovenance.model

Prefix definition for OPM serialisations.

NamespacePrefixMapper(String) - Constructor for class org.openprovenance.model.NamespacePrefixMapper

NEW_ENCODING_PROPERTY - Static variable in interface org.openprovenance.model.CommonURIs

NEW_LABEL_PROPERTY - Static variable in interface org.openprovenance.model.CommonURIs

NEW_PNAME_PROPERTY - Static variable in interface org.openprovenance.model.CommonURIs

NEW_PROFILE_PROPERTY - Static variable in interface org.openprovenance.model.CommonURIs

NEW_TYPE_PROPERTY - Static variable in interface org.openprovenance.model.CommonURIs

NEW_VALUE_PROPERTY - Static variable in interface org.openprovenance.model.CommonURIs

newAccount(QName) - Method in class org.openprovenance.elmo.RdfOPMFactory

newAccount(Account) - Method in class org.openprovenance.elmo.RdfOPMFactory

newAccount(String) - Method in class org.openprovenance.model.OPMFactory

newAccount(String, String) - Method in class org.openprovenance.model.OPMFactory

newAccount(Account) - Method in class org.openprovenance.model.OPMFactory

newAccountRef(Account) - Method in class org.openprovenance.model.OPMFactory

newAccounts(List<AccountRef>) - Method in class org.openprovenance.elmo.RdfOPMFactory

newAccounts(Collection<Account>, Collection<Overlaps>) - Method in class org.openprovenance.model.OPMFactory

newAgent(Agent) - Method in class org.openprovenance.elmo.RdfOPMFactory

newAgent(QName) - Method in class org.openprovenance.elmo.RdfOPMFactory

newAgent(String, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newAgent(String, Collection<Account>, String) - Method in class org.openprovenance.model.OPMFactory

newAgent(Agent) - Method in class org.openprovenance.model.OPMFactory

newAgentRef(Agent) - Method in class org.openprovenance.model.OPMFactory

newAnnotation(Annotation) - Method in class org.openprovenance.elmo.RdfOPMFactory

newAnnotation(Annotation) - Method in class org.openprovenance.elmo.RdfOPMFactory

newAnnotation(String, Artifact, String, Object, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newAnnotation(String, Process, String, Object, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newAnnotation(String, Annotation, String, Object, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newAnnotation(String, WasDerivedFrom, String, Object, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newAnnotation(String, Used, String, Object, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newAnnotation(String, WasGeneratedBy, String, Object, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newAnnotation(String, WasControlledBy, String, Object, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newAnnotation(String, WasTriggeredBy, String, Object, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newAnnotation(String, Role, String, Object, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newAnnotation(String, Ref, String, Object, Collection<AccountRef>) - Method in class org.openprovenance.model.OPMFactory

newAnnotation(String, Object, List<Property>, Collection<AccountRef>) - Method in class org.openprovenance.model.OPMFactory

newAnnotation(Annotation) - Method in class org.openprovenance.model.OPMFactory

newAnnotationRef(Annotation) - Method in class org.openprovenance.model.OPMFactory

newArtifact(Artifact) - Method in class org.openprovenance.elmo.RdfOPMFactory

newArtifact(QName) - Method in class org.openprovenance.elmo.RdfOPMFactory

newArtifact(Artifact) - Method in class org.openprovenance.model.OPMFactory

newArtifact(String, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newArtifact(String, Collection<Account>, String) - Method in class org.openprovenance.model.OPMFactory

newArtifactRef(Artifact) - Method in class org.openprovenance.model.OPMFactory

newContained(String, Artifact, Artifact, Collection<Account>) - Method in class org.openprovenance.model.collections.CollectionFactory

newDependencyRef(WasGeneratedBy) - Method in class org.openprovenance.model.OPMFactory

newDependencyRef(Used) - Method in class org.openprovenance.model.OPMFactory

newDependencyRef(WasDerivedFrom) - Method in class org.openprovenance.model.OPMFactory

newDependencyRef(WasControlledBy) - Method in class org.openprovenance.model.OPMFactory

newDependencyRef(WasTriggeredBy) - Method in class org.openprovenance.model.OPMFactory

newEmbeddedAnnotation(Annotation) - Method in class org.openprovenance.elmo.RdfOPMFactory

newEmbeddedAnnotation(String, String, Object, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newEmbeddedAnnotation(String, String, Object, Collection<AccountRef>, Object) - Method in class org.openprovenance.model.OPMFactory

newEmbeddedAnnotation(String, List<Property>, Collection<AccountRef>, Object) - Method in class org.openprovenance.model.OPMFactory

newInstantaneousTime(XMLGregorianCalendar) - Method in class org.openprovenance.model.OPMFactory

newInstantaneousTime(String) - Method in class org.openprovenance.model.OPMFactory

newInstantaneousTime(Date) - Method in class org.openprovenance.model.OPMFactory

newInstantaneousTimeNow() - Method in class org.openprovenance.model.OPMFactory

newLabel(String) - Method in class org.openprovenance.model.OPMFactory

newOPMGraph(String, Collection<Account>, Collection<Overlaps>, Collection<Process>, Collection<Artifact>, Collection<Agent>, Collection<Object>, Collection<Annotation>) - Method in class org.openprovenance.elmo.RdfOPMFactory

newOPMGraph(OPMGraph) - Method in class org.openprovenance.elmo.RdfOPMFactory

newOPMGraph(OPMGraph) - Method in class org.openprovenance.elmo.RdfOPMFactory

Clones an OPMGraph to an OPMGraph with facade, and creates corresponding rdf representation in triple store.

newOPMGraph(Collection<Account>, Collection<Overlaps>, Collection<Process>, Collection<Artifact>, Collection<Agent>, Collection<Object>) - Method in class org.openprovenance.model.OPMFactory

newOPMGraph(Collection<Account>, Collection<Overlaps>, Collection<Process>, Collection<Artifact>, Collection<Agent>, Collection<Object>, Collection<Annotation>) - Method in class org.openprovenance.model.OPMFactory

newOPMGraph(String, Collection<Account>, Collection<Overlaps>, Collection<Process>, Collection<Artifact>, Collection<Agent>, Collection<Object>, Collection<Annotation>) - Method in class org.openprovenance.model.OPMFactory

newOPMGraph(Collection<Account>, Overlaps[], Process[], Artifact[], Agent[], Object[]) - Method in class org.openprovenance.model.OPMFactory

newOPMGraph(Collection<Account>, Overlaps[], Process[], Artifact[], Agent[], Object[], Annotation[]) - Method in class org.openprovenance.model.OPMFactory

newOPMGraph(String, Collection<Account>, Overlaps[], Process[], Artifact[], Agent[], Object[], Annotation[]) - Method in class org.openprovenance.model.OPMFactory

newOPMGraph(Accounts, Processes, Artifacts, Agents, Dependencies) - Method in class org.openprovenance.model.OPMFactory

newOPMGraph(Accounts, Processes, Artifacts, Agents, Dependencies, Annotations) - Method in class org.openprovenance.model.OPMFactory

newOPMGraph(OPMGraph) - Method in class org.openprovenance.model.OPMFactory

newOTime(OTime) - Method in class org.openprovenance.elmo.RdfOPMFactory

newOTime(OTime) - Method in class org.openprovenance.model.OPMFactory

newOTime(XMLGregorianCalendar, XMLGregorianCalendar, XMLGregorianCalendar) - Method in class org.openprovenance.model.OPMFactory

newOTime(XMLGregorianCalendar, XMLGregorianCalendar) - Method in class org.openprovenance.model.OPMFactory

newOTime(XMLGregorianCalendar) - Method in class org.openprovenance.model.OPMFactory

newOTime(String, String) - Method in class org.openprovenance.model.OPMFactory

newOTime(Date, Date) - Method in class org.openprovenance.model.OPMFactory

newOTime(Date) - Method in class org.openprovenance.model.OPMFactory

newOverlaps(Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newOverlaps(AccountRef, AccountRef) - Method in class org.openprovenance.model.OPMFactory

newPName(String) - Method in class org.openprovenance.model.OPMFactory

newProcess(Process) - Method in class org.openprovenance.elmo.RdfOPMFactory

newProcess(QName) - Method in class org.openprovenance.elmo.RdfOPMFactory

newProcess(String, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newProcess(String, Collection<Account>, String) - Method in class org.openprovenance.model.OPMFactory

newProcess(Process) - Method in class org.openprovenance.model.OPMFactory

newProcessRef(Process) - Method in class org.openprovenance.model.OPMFactory

newProfile(String) - Method in class org.openprovenance.model.OPMFactory

newProperties(List<Property>) - Method in class org.openprovenance.elmo.RdfOPMFactory

newProperty(Property) - Method in class org.openprovenance.elmo.RdfOPMFactory

newProperty(String, Object) - Method in class org.openprovenance.model.OPMFactory

newProperty(Property) - Method in class org.openprovenance.model.OPMFactory

newRole(QName) - Method in class org.openprovenance.elmo.RdfOPMFactory

newRole(Role) - Method in class org.openprovenance.elmo.RdfOPMFactory

newRole(String) - Method in class org.openprovenance.model.OPMFactory

newRole(Role) - Method in class org.openprovenance.model.OPMFactory

newRole(String, String) - Method in class org.openprovenance.model.OPMFactory

newRoleRef(Role) - Method in class org.openprovenance.model.OPMFactory

newType(String) - Method in class org.openprovenance.model.OPMFactory

newUsed(Used) - Method in class org.openprovenance.elmo.RdfOPMFactory

newUsed(Used) - Method in class org.openprovenance.elmo.RdfOPMFactory

newUsed(String, ProcessRef, Role, ArtifactRef, Collection<AccountRef>) - Method in class org.openprovenance.model.OPMFactory

newUsed(Process, Role, Artifact, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newUsed(String, Process, Role, Artifact, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newUsed(String, Process, Role, Artifact, String, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newUsed(Used) - Method in class org.openprovenance.model.OPMFactory

newUsedStar(ProcessRef, ArtifactRef, Collection<AccountRef>) - Method in class org.openprovenance.model.OPMFactory

newUsedStar(Process, Artifact, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newValue(Object, String) - Method in class org.openprovenance.model.OPMFactory

newWasControlledBy(WasControlledBy) - Method in class org.openprovenance.elmo.RdfOPMFactory

newWasControlledBy(WasControlledBy) - Method in class org.openprovenance.elmo.RdfOPMFactory

newWasControlledBy(WasControlledBy) - Method in class org.openprovenance.model.OPMFactory

newWasControlledBy(ProcessRef, Role, AgentRef, Collection<AccountRef>) - Method in class org.openprovenance.model.OPMFactory

newWasControlledBy(String, ProcessRef, Role, AgentRef, Collection<AccountRef>) - Method in class org.openprovenance.model.OPMFactory

newWasControlledBy(Process, Role, Agent, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newWasControlledBy(String, Process, Role, Agent, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newWasControlledBy(String, Process, Role, Agent, String, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newWasDerivedFrom(WasDerivedFrom) - Method in class org.openprovenance.elmo.RdfOPMFactory

newWasDerivedFrom(WasDerivedFrom) - Method in class org.openprovenance.elmo.RdfOPMFactory

newWasDerivedFrom(WasDerivedFrom) - Method in class org.openprovenance.model.OPMFactory

newWasDerivedFrom(String, ArtifactRef, ArtifactRef, Collection<AccountRef>) - Method in class org.openprovenance.model.OPMFactory

newWasDerivedFrom(Artifact, Artifact, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newWasDerivedFrom(String, Artifact, Artifact, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newWasDerivedFrom(String, Artifact, Artifact, String, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newWasDerivedFromStar(ArtifactRef, ArtifactRef, Collection<AccountRef>) - Method in class org.openprovenance.model.OPMFactory

newWasDerivedFromStar(Artifact, Artifact, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newWasGeneratedBy(WasGeneratedBy) - Method in class org.openprovenance.elmo.RdfOPMFactory

newWasGeneratedBy(WasGeneratedBy) - Method in class org.openprovenance.elmo.RdfOPMFactory

newWasGeneratedBy(WasGeneratedBy) - Method in class org.openprovenance.model.OPMFactory

newWasGeneratedBy(String, ArtifactRef, Role, ProcessRef, Collection<AccountRef>) - Method in class org.openprovenance.model.OPMFactory

newWasGeneratedBy(Artifact, Role, Process, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newWasGeneratedBy(String, Artifact, Role, Process, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newWasGeneratedBy(String, Artifact, Role, Process, String, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newWasGeneratedByStar(ArtifactRef, ProcessRef, Collection<AccountRef>) - Method in class org.openprovenance.model.OPMFactory

newWasGeneratedByStar(Artifact, Process, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newWasIdenticalTo(String, Artifact, Artifact, Collection<Account>) - Method in class org.openprovenance.model.collections.CollectionFactory

newWasTriggeredBy(WasTriggeredBy) - Method in class org.openprovenance.elmo.RdfOPMFactory

newWasTriggeredBy(WasTriggeredBy) - Method in class org.openprovenance.elmo.RdfOPMFactory

newWasTriggeredBy(WasTriggeredBy) - Method in class org.openprovenance.model.OPMFactory

newWasTriggeredBy(String, ProcessRef, ProcessRef, Collection<AccountRef>) - Method in class org.openprovenance.model.OPMFactory

newWasTriggeredBy(Process, Process, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newWasTriggeredBy(String, Process, Process, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newWasTriggeredBy(String, Process, Process, String, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newWasTriggeredByStar(ProcessRef, ProcessRef, Collection<AccountRef>) - Method in class org.openprovenance.model.OPMFactory

newWasTriggeredByStar(Process, Process, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newXMLGregorianCalendar(GregorianCalendar) - Method in class org.openprovenance.model.OPMFactory

noAnnotation(OPMGraph) - Method in class org.openprovenance.model.Normalise

Node - Interface in org.openprovenance.model

Node - Interface in org.openprovenance.rdf

Node is the class of nodes in an OPM graph.

noEarlierThan - Variable in class org.openprovenance.model.OTime

noLaterThan - Variable in class org.openprovenance.model.OTime

Normalise - Class in org.openprovenance.model

Normalise(OPMFactory) - Constructor for class org.openprovenance.model.Normalise

O

ObjectFactory - Class in org.openprovenance.model

This object contains factory methods for each Java content interface and Java element interface generated in the org.openprovenance.model package.

ObjectFactory() - Constructor for class org.openprovenance.model.ObjectFactory

Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: org.openprovenance.model

ObjectFactory - Class in org.openprovenance.model.printer

This object contains factory methods for each Java content interface and Java element interface generated in the org.openprovenance.model.printer package.

ObjectFactory() - Constructor for class org.openprovenance.model.printer.ObjectFactory

Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: org.openprovenance.model.printer

ObjectFactory - Class in org.openprovenance.profile.collections

This object contains factory methods for each Java content interface and Java element interface generated in the org.openprovenance.profile.collections package.

ObjectFactory() - Constructor for class org.openprovenance.profile.collections.ObjectFactory

Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: org.openprovenance.profile.collections

of - Variable in class org.openprovenance.model.IndexedOPMGraph

of - Variable in class org.openprovenance.model.OPMFactory

OPMDeserialiser - Class in org.openprovenance.model

Deserialiser of OPM Graphs.

OPMDeserialiser() - Constructor for class org.openprovenance.model.OPMDeserialiser

OPMDeserialiser(String) - Constructor for class org.openprovenance.model.OPMDeserialiser

OPMFactory - Class in org.openprovenance.model

A stateless factory of OPM objects.

OPMFactory() - Constructor for class org.openprovenance.model.OPMFactory

OPMFactory(ObjectFactory) - Constructor for class org.openprovenance.model.OPMFactory

OPMGraph - Class in org.openprovenance.model

Java class for OPMGraph complex type.

OPMGraph() - Constructor for class org.openprovenance.model.OPMGraph

OPMGraph - Interface in org.openprovenance.rdf

The class of all OPM graphs.

opmGraphIdPrefix - Static variable in class org.openprovenance.model.OPMFactory

OPMGraphRef - Class in org.openprovenance.model

Java class for OPMGraphRef complex type.

OPMGraphRef() - Constructor for class org.openprovenance.model.OPMGraphRef

OPMO_NS - Static variable in class org.openprovenance.jena.TripleStore

OPMPrinterConfigDeserialiser - Class in org.openprovenance.model.printer

Deserialiser of OPM Graphs.

OPMPrinterConfigDeserialiser() - Constructor for class org.openprovenance.model.printer.OPMPrinterConfigDeserialiser

OPMPrinterConfigDeserialiser(String) - Constructor for class org.openprovenance.model.printer.OPMPrinterConfigDeserialiser

OPMPrinterConfiguration - Class in org.openprovenance.model.printer

Java class for OPMPrinterConfiguration complex type.

OPMPrinterConfiguration() - Constructor for class org.openprovenance.model.printer.OPMPrinterConfiguration

OPMSerialiser - Class in org.openprovenance.model

Serialiser of OPM Graphs.

OPMSerialiser() - Constructor for class org.openprovenance.model.OPMSerialiser

OPMSerialiser(boolean) - Constructor for class org.openprovenance.model.OPMSerialiser

OPMSerialiser(String) - Constructor for class org.openprovenance.model.OPMSerialiser

OPMSerialiser(boolean, String) - Constructor for class org.openprovenance.model.OPMSerialiser

OPMToDot - Class in org.openprovenance.model

Serialisation of OPM Graphs to DOT format.

OPMToDot() - Constructor for class org.openprovenance.model.OPMToDot

OPMToDot(boolean) - Constructor for class org.openprovenance.model.OPMToDot

OPMToDot(String) - Constructor for class org.openprovenance.model.OPMToDot

OPMUtilities - Class in org.openprovenance.model

Utilities for manipulating OPM Graphs.

OPMUtilities() - Constructor for class org.openprovenance.model.OPMUtilities

OPMV_NS - Static variable in class org.openprovenance.jena.TripleStore

org.openprovenance.dc - package org.openprovenance.dc

org.openprovenance.elmo - package org.openprovenance.elmo

org.openprovenance.jena - package org.openprovenance.jena

org.openprovenance.model - package org.openprovenance.model

Open Provenance Model classes and associated factories and (de)serialisation methods.

org.openprovenance.model.collections - package org.openprovenance.model.collections

org.openprovenance.model.printer - package org.openprovenance.model.printer

org.openprovenance.profile.collections - package org.openprovenance.profile.collections

org.openprovenance.rdf - package org.openprovenance.rdf

OTime - Class in org.openprovenance.model

Observed Time allow for interval of observation, where an event is said to occur no earlier than a given time t1 and no later than a given time t2.

OTime() - Constructor for class org.openprovenance.model.OTime

OTime - Interface in org.openprovenance.rdf

Observed time.

overlaps - Variable in class org.openprovenance.model.Accounts

Overlaps - Class in org.openprovenance.model

Java class for Overlaps complex type.

Overlaps() - Constructor for class org.openprovenance.model.Overlaps

P

packageList - Static variable in class org.openprovenance.model.OPMFactory

PName - Class in org.openprovenance.model

Java class for PName complex type.

PName() - Constructor for class org.openprovenance.model.PName

PNAME_PROPERTY - Static variable in interface org.openprovenance.model.CommonURIs

printIterator(Iterator<?>, String) - Static method in class org.openprovenance.jena.TripleStore

printRole - Variable in class org.openprovenance.model.printer.EdgeStyleMapEntry

process - Variable in class org.openprovenance.model.printer.ProcessMap

Process - Class in org.openprovenance.model

Java class for Process complex type.

Process() - Constructor for class org.openprovenance.model.Process

process - Variable in class org.openprovenance.model.Processes

Process - Interface in org.openprovenance.rdf

processAnnotations(Annotable, Annotable) - Method in class org.openprovenance.elmo.RdfOPMFactory

processColor(Process) - Method in class org.openprovenance.model.OPMToDot

processes - Variable in class org.openprovenance.model.OPMGraph

processes - Variable in class org.openprovenance.model.printer.OPMPrinterConfiguration

Processes - Class in org.openprovenance.model

Java class for Processes complex type.

Processes() - Constructor for class org.openprovenance.model.Processes

processLabel(Process) - Method in class org.openprovenance.model.OPMToDot

ProcessMap - Class in org.openprovenance.model.printer

Java class for ProcessMap complex type.

ProcessMap() - Constructor for class org.openprovenance.model.printer.ProcessMap

ProcessMapEntry - Class in org.openprovenance.model.printer

Java class for ProcessMapEntry complex type.

ProcessMapEntry() - Constructor for class org.openprovenance.model.printer.ProcessMapEntry

ProcessRef - Class in org.openprovenance.model

Java class for ProcessRef complex type.

ProcessRef() - Constructor for class org.openprovenance.model.ProcessRef

Profile - Class in org.openprovenance.model

Java class for Profile complex type.

Profile() - Constructor for class org.openprovenance.model.Profile

PROFILE_PROPERTY - Static variable in interface org.openprovenance.model.CommonURIs

property - Variable in class org.openprovenance.model.EmbeddedAnnotation

Property - Class in org.openprovenance.model

Java class for Property complex type.

Property() - Constructor for class org.openprovenance.model.Property

Property - Interface in org.openprovenance.rdf

Building block allowing for the construction of annotations.

PropertyOrRole - Interface in org.openprovenance.rdf

Q

Querier - Class in org.openprovenance.jena

Querier(Model) - Constructor for class org.openprovenance.jena.Querier

R

RdfAccount - Class in org.openprovenance.elmo

RdfAccount(ElmoManager, QName) - Constructor for class org.openprovenance.elmo.RdfAccount

RdfAccount(ElmoManager, String) - Constructor for class org.openprovenance.elmo.RdfAccount

RdfAgent - Class in org.openprovenance.elmo

RdfAgent(ElmoManager, String) - Constructor for class org.openprovenance.elmo.RdfAgent

RdfAgent(ElmoManager, QName) - Constructor for class org.openprovenance.elmo.RdfAgent

RdfAnnotation - Class in org.openprovenance.elmo

RdfAnnotation(ElmoManager, QName) - Constructor for class org.openprovenance.elmo.RdfAnnotation

RdfAnnotation(ElmoManager, String) - Constructor for class org.openprovenance.elmo.RdfAnnotation

RdfArtifact - Class in org.openprovenance.elmo

RdfArtifact(ElmoManager, String) - Constructor for class org.openprovenance.elmo.RdfArtifact

RdfArtifact(ElmoManager, QName) - Constructor for class org.openprovenance.elmo.RdfArtifact

RdfEmbeddedAnnotation - Class in org.openprovenance.elmo

RdfEmbeddedAnnotation(ElmoManager, QName) - Constructor for class org.openprovenance.elmo.RdfEmbeddedAnnotation

RdfEmbeddedAnnotation(ElmoManager, String) - Constructor for class org.openprovenance.elmo.RdfEmbeddedAnnotation

RdfLabel - Class in org.openprovenance.elmo

RdfLabel(ElmoManager, String) - Constructor for class org.openprovenance.elmo.RdfLabel

RdfObjectFactory - Class in org.openprovenance.elmo

RdfObjectFactory(ElmoManager, String) - Constructor for class org.openprovenance.elmo.RdfObjectFactory

RdfOPMFactory - Class in org.openprovenance.elmo

The factory class to create OPM entities that can be serialised to rdf.

RdfOPMFactory(ObjectFactory) - Constructor for class org.openprovenance.elmo.RdfOPMFactory

RdfOPMFactory(ObjectFactory, ElmoManager) - Constructor for class org.openprovenance.elmo.RdfOPMFactory

RdfOPMGraph - Class in org.openprovenance.elmo

RdfOPMGraph(ElmoManager, String) - Constructor for class org.openprovenance.elmo.RdfOPMGraph

RdfOTime - Class in org.openprovenance.elmo

RdfOTime(ElmoManager, QName) - Constructor for class org.openprovenance.elmo.RdfOTime

RdfOTime(ElmoManager, String) - Constructor for class org.openprovenance.elmo.RdfOTime

RdfPName - Class in org.openprovenance.elmo

RdfPName(ElmoManager, String) - Constructor for class org.openprovenance.elmo.RdfPName

RdfProcess - Class in org.openprovenance.elmo

RdfProcess(ElmoManager, String) - Constructor for class org.openprovenance.elmo.RdfProcess

RdfProcess(ElmoManager, QName) - Constructor for class org.openprovenance.elmo.RdfProcess

RdfProfile - Class in org.openprovenance.elmo

RdfProfile(ElmoManager, String) - Constructor for class org.openprovenance.elmo.RdfProfile

RdfProperty - Class in org.openprovenance.elmo

RdfProperty(ElmoManager, QName) - Constructor for class org.openprovenance.elmo.RdfProperty

RdfProperty(ElmoManager, String) - Constructor for class org.openprovenance.elmo.RdfProperty

RdfRole - Class in org.openprovenance.elmo

RdfRole(ElmoManager, QName) - Constructor for class org.openprovenance.elmo.RdfRole

RdfRole(ElmoManager, QName, String) - Constructor for class org.openprovenance.elmo.RdfRole

RdfRole(ElmoManager, String) - Constructor for class org.openprovenance.elmo.RdfRole

rdfToXml(String, String, String, String) - Method in class org.openprovenance.elmo.RepositoryHelper

RdfType - Class in org.openprovenance.elmo

RdfType(ElmoManager, String) - Constructor for class org.openprovenance.elmo.RdfType

RdfUsed - Class in org.openprovenance.elmo

RdfUsed(ElmoManager, QName) - Constructor for class org.openprovenance.elmo.RdfUsed

RdfUsed(ElmoManager, String) - Constructor for class org.openprovenance.elmo.RdfUsed

RdfValue - Class in org.openprovenance.elmo

RdfValue(ElmoManager, QName) - Constructor for class org.openprovenance.elmo.RdfValue

RdfValue(ElmoManager, String) - Constructor for class org.openprovenance.elmo.RdfValue

RdfWasControlledBy - Class in org.openprovenance.elmo

RdfWasControlledBy(ElmoManager, QName) - Constructor for class org.openprovenance.elmo.RdfWasControlledBy

RdfWasControlledBy(ElmoManager, String) - Constructor for class org.openprovenance.elmo.RdfWasControlledBy

RdfWasDerivedFrom - Class in org.openprovenance.elmo

RdfWasDerivedFrom(ElmoManager, QName) - Constructor for class org.openprovenance.elmo.RdfWasDerivedFrom

RdfWasDerivedFrom(ElmoManager, String) - Constructor for class org.openprovenance.elmo.RdfWasDerivedFrom

RdfWasGeneratedBy - Class in org.openprovenance.elmo

RdfWasGeneratedBy(ElmoManager, QName) - Constructor for class org.openprovenance.elmo.RdfWasGeneratedBy

RdfWasGeneratedBy(ElmoManager, String) - Constructor for class org.openprovenance.elmo.RdfWasGeneratedBy

RdfWasTriggeredBy - Class in org.openprovenance.elmo

RdfWasTriggeredBy(ElmoManager, QName) - Constructor for class org.openprovenance.elmo.RdfWasTriggeredBy

RdfWasTriggeredBy(ElmoManager, String) - Constructor for class org.openprovenance.elmo.RdfWasTriggeredBy

readFile(String, String) - Method in class org.openprovenance.jena.TripleStore

readFiles(String[], String) - Method in class org.openprovenance.jena.TripleStore

readFromRDF(File, String, SesameManager, RDFFormat) - Method in class org.openprovenance.elmo.RepositoryHelper

readResource(String, String, String) - Method in class org.openprovenance.jena.TripleStore

ref - Variable in class org.openprovenance.model.AccountRef

ref - Variable in class org.openprovenance.model.AgentRef

ref - Variable in class org.openprovenance.model.AnnotationRef

ref - Variable in class org.openprovenance.model.ArtifactRef

ref - Variable in class org.openprovenance.model.DependencyRef

ref - Variable in class org.openprovenance.model.OPMGraphRef

ref - Variable in class org.openprovenance.model.ProcessRef

Ref - Interface in org.openprovenance.model

ref - Variable in class org.openprovenance.model.RoleRef

register(QName, RdfAgent) - Method in class org.openprovenance.elmo.RdfOPMFactory

register(QName, RdfProcess) - Method in class org.openprovenance.elmo.RdfOPMFactory

register(QName, RdfArtifact) - Method in class org.openprovenance.elmo.RdfOPMFactory

register(QName, RdfAccount) - Method in class org.openprovenance.elmo.RdfOPMFactory

register(String, Agent) - Method in class org.openprovenance.elmo.RdfOPMFactory

register(String, Process) - Method in class org.openprovenance.elmo.RdfOPMFactory

register(String, Artifact) - Method in class org.openprovenance.elmo.RdfOPMFactory

register(String, Account) - Method in class org.openprovenance.elmo.RdfOPMFactory

registerConcepts(ElmoModule) - Method in class org.openprovenance.elmo.RepositoryHelper

RepositoryHelper - Class in org.openprovenance.elmo

RepositoryHelper() - Constructor for class org.openprovenance.elmo.RepositoryHelper

Role - Class in org.openprovenance.model

Java class for Role complex type.

Role() - Constructor for class org.openprovenance.model.Role

role - Variable in class org.openprovenance.model.Used

role - Variable in class org.openprovenance.model.WasControlledBy

role - Variable in class org.openprovenance.model.WasGeneratedBy

Role - Interface in org.openprovenance.rdf

A role designates an artifact’s or agent’s function in a process.

roleIdPrefix - Static variable in class org.openprovenance.model.OPMFactory

RoleRef - Class in org.openprovenance.model

Java class for RoleRef complex type.

RoleRef() - Constructor for class org.openprovenance.model.RoleRef

runQueryAndFormatResult(String) - Method in class org.openprovenance.jena.TripleStore

S

selectColor(List<String>) - Method in class org.openprovenance.model.OPMToDot

serialiseOPMGraph(OPMGraph) - Method in class org.openprovenance.model.OPMSerialiser

serialiseOPMGraph(Node, OPMGraph) - Method in class org.openprovenance.model.OPMSerialiser

serialiseOPMGraph(StringWriter, OPMGraph) - Method in class org.openprovenance.model.OPMSerialiser

serialiseOPMGraph(StringWriter, OPMGraph, boolean) - Method in class org.openprovenance.model.OPMSerialiser

serialiseOPMGraph(File, OPMGraph, boolean) - Method in class org.openprovenance.model.OPMSerialiser

setAccounts(Set<? extends Account>) - Method in class org.openprovenance.elmo.RdfAgent

setAccounts(Set<? extends Account>) - Method in class org.openprovenance.elmo.RdfWasDerivedFrom

setAccounts(Set<? extends Account>) - Method in class org.openprovenance.elmo.RdfWasTriggeredBy

setAccounts(Accounts) - Method in class org.openprovenance.model.OPMGraph

Sets the value of the accounts property.

setAccounts(AccountMap) - Method in class org.openprovenance.model.printer.OPMPrinterConfiguration

Sets the value of the accounts property.

setAccounts(Set<? extends Account>) - Method in interface org.openprovenance.rdf.AnnotationOrEdgeOrNode

Object Property to express the member of an OPM entity to some Account.

setAgents(Agents) - Method in class org.openprovenance.model.OPMGraph

Sets the value of the agents property.

setAgents(AgentMap) - Method in class org.openprovenance.model.printer.OPMPrinterConfiguration

Sets the value of the agents property.

setAnnotations(Set<? extends Annotation>) - Method in class org.openprovenance.elmo.RdfAgent

setAnnotations(Set<? extends Annotation>) - Method in class org.openprovenance.elmo.RdfRole

setAnnotations(Set<? extends Annotation>) - Method in class org.openprovenance.elmo.RdfWasDerivedFrom

setAnnotations(Set<? extends Annotation>) - Method in class org.openprovenance.elmo.RdfWasTriggeredBy

setAnnotations(Annotations) - Method in class org.openprovenance.model.OPMGraph

Sets the value of the annotations property.

setAnnotations(Set<? extends Annotation>) - Method in interface org.openprovenance.rdf.Annotable

Object property to associate an Annotable entity and an Annotation.

setArtifacts(Artifacts) - Method in class org.openprovenance.model.OPMGraph

Sets the value of the artifacts property.

setArtifacts(ArtifactMap) - Method in class org.openprovenance.model.printer.OPMPrinterConfiguration

Sets the value of the artifacts property.

setAvalues(Set<? extends AValue>) - Method in interface org.openprovenance.rdf.Artifact

Denotes a serialization of an application value associated with an Artifact.

setCause(ArtifactRef) - Method in class org.openprovenance.elmo.RdfUsed

setCause(AgentRef) - Method in class org.openprovenance.elmo.RdfWasControlledBy

setCause(ArtifactRef) - Method in class org.openprovenance.elmo.RdfWasDerivedFrom

setCause(ProcessRef) - Method in class org.openprovenance.elmo.RdfWasGeneratedBy

setCause(ProcessRef) - Method in class org.openprovenance.elmo.RdfWasTriggeredBy

setCause(ArtifactRef) - Method in class org.openprovenance.model.Used

Sets the value of the cause property.

setCause(ArtifactRef) - Method in class org.openprovenance.model.UsedStar

Sets the value of the cause property.

setCause(AgentRef) - Method in class org.openprovenance.model.WasControlledBy

Sets the value of the cause property.

setCause(ArtifactRef) - Method in class org.openprovenance.model.WasDerivedFrom

Sets the value of the cause property.

setCause(ArtifactRef) - Method in class org.openprovenance.model.WasDerivedFromStar

Sets the value of the cause property.

setCause(ProcessRef) - Method in class org.openprovenance.model.WasGeneratedBy

Sets the value of the cause property.

setCause(ProcessRef) - Method in class org.openprovenance.model.WasGeneratedByStar

Sets the value of the cause property.

setCause(ProcessRef) - Method in class org.openprovenance.model.WasTriggeredBy

Sets the value of the cause property.

setCause(ProcessRef) - Method in class org.openprovenance.model.WasTriggeredByStar

Sets the value of the cause property.

setCause(Node) - Method in interface org.openprovenance.rdf.Edge

The cause of an Edge.

setCauseUsed(Artifact) - Method in interface org.openprovenance.rdf.Used

The cause of a Used edge.

setCauseWasControlledBy(Agent) - Method in interface org.openprovenance.rdf.WasControlledBy

The cause of a WasControlledBy edge.

setCauseWasDerivedFrom(Artifact) - Method in interface org.openprovenance.rdf.WasDerivedFrom

The cause of a WasDerivedFrom edge.

setCauseWasGeneratedBy(Process) - Method in interface org.openprovenance.rdf.WasGeneratedBy

The cause of a WasGeneratedBy edge.

setCauseWasTriggeredBy(Process) - Method in interface org.openprovenance.rdf.WasTriggeredBy

The cause of a WasTriggeredBy edge.

setColor(String) - Method in class org.openprovenance.model.printer.AccountColorMapEntry

Sets the value of the color property.

setColoredAsAccount(Boolean) - Method in class org.openprovenance.model.printer.AgentMap

Sets the value of the coloredAsAccount property.

setColoredAsAccount(Boolean) - Method in class org.openprovenance.model.printer.ArtifactMap

Sets the value of the coloredAsAccount property.

setColoredAsAccount(Boolean) - Method in class org.openprovenance.model.printer.ProcessMap

Sets the value of the coloredAsAccount property.

setContent(Object) - Method in class org.openprovenance.elmo.RdfValue

setContent(Object) - Method in class org.openprovenance.model.Value

Sets the value of the content property.

setContent(Object) - Method in interface org.openprovenance.rdf.AValue

Content of the serial representation of Artifact.

setContributors(Set<?>) - Method in interface org.openprovenance.dc.DcResource

setCreators(Set<?>) - Method in interface org.openprovenance.dc.DcResource

setDatapropertyAbbreviation(Set<?>) - Method in interface org.openprovenance.rdf.Annotable

The OPM Ontology offers several data properties that are abbreviation of common properties defined by OPM.

setDates(Set<?>) - Method in interface org.openprovenance.dc.DcResource

setDefault(String) - Method in class org.openprovenance.model.printer.EdgeStyleMap

Sets the value of the default property.

setDefaultAccount(String) - Method in class org.openprovenance.model.printer.AccountMap

Sets the value of the defaultAccount property.

setDefaultColor(String) - Method in class org.openprovenance.model.printer.AccountMap

Sets the value of the defaultColor property.

setDependencies(Dependencies) - Method in class org.openprovenance.model.OPMGraph

Sets the value of the dependencies property.

setDisplay(String) - Method in class org.openprovenance.model.printer.AgentMapEntry

Sets the value of the display property.

setDisplay(String) - Method in class org.openprovenance.model.printer.ArtifactMapEntry

Sets the value of the display property.

setDisplay(String) - Method in class org.openprovenance.model.printer.ProcessMapEntry

Sets the value of the display property.

setDisplayArtifactValue(Boolean) - Method in class org.openprovenance.model.printer.OPMPrinterConfiguration

Sets the value of the displayArtifactValue property.

setDisplayValue(Boolean) - Method in class org.openprovenance.model.printer.AgentMap

Sets the value of the displayValue property.

setDisplayValue(Boolean) - Method in class org.openprovenance.model.printer.ArtifactMap

Sets the value of the displayValue property.

setDisplayValue(Boolean) - Method in class org.openprovenance.model.printer.ProcessMap

Sets the value of the displayValue property.

setEdgeRole(Set<? extends Role>) - Method in class org.openprovenance.elmo.RdfWasTriggeredBy

setEdges(EdgeStyleMap) - Method in class org.openprovenance.model.printer.OPMPrinterConfiguration

Sets the value of the edges property.

setEffect(ProcessRef) - Method in class org.openprovenance.elmo.RdfUsed

setEffect(ProcessRef) - Method in class org.openprovenance.elmo.RdfWasControlledBy

setEffect(ArtifactRef) - Method in class org.openprovenance.elmo.RdfWasDerivedFrom

setEffect(ArtifactRef) - Method in class org.openprovenance.elmo.RdfWasGeneratedBy

setEffect(ProcessRef) - Method in class org.openprovenance.elmo.RdfWasTriggeredBy

setEffect(ProcessRef) - Method in class org.openprovenance.model.Used

Sets the value of the effect property.

setEffect(ProcessRef) - Method in class org.openprovenance.model.UsedStar

Sets the value of the effect property.

setEffect(ProcessRef) - Method in class org.openprovenance.model.WasControlledBy

Sets the value of the effect property.

setEffect(ArtifactRef) - Method in class org.openprovenance.model.WasDerivedFrom

Sets the value of the effect property.

setEffect(ArtifactRef) - Method in class org.openprovenance.model.WasDerivedFromStar

Sets the value of the effect property.

setEffect(ArtifactRef) - Method in class org.openprovenance.model.WasGeneratedBy

Sets the value of the effect property.

setEffect(ArtifactRef) - Method in class org.openprovenance.model.WasGeneratedByStar

Sets the value of the effect property.

setEffect(ProcessRef) - Method in class org.openprovenance.model.WasTriggeredBy

Sets the value of the effect property.

setEffect(ProcessRef) - Method in class org.openprovenance.model.WasTriggeredByStar

Sets the value of the effect property.

setEffect(Node) - Method in interface org.openprovenance.rdf.Edge

The effect of an Edge.

setEffectInverse(Set<? extends Edge>) - Method in interface org.openprovenance.rdf.Node

Convenience class introduced to describe the inverse of an effect.

setEffectUsed(Process) - Method in interface org.openprovenance.rdf.Used

The effect of a Used edge.

setEffectUsedInverse(Set<? extends Used>) - Method in interface org.openprovenance.rdf.Process

The cause of a Process by means of a Used edge.

setEffectWasControlledBy(Process) - Method in interface org.openprovenance.rdf.WasControlledBy

The effect of a WasControlledBy edge.

setEffectWasControlledByInverse(Set<? extends WasControlledBy>) - Method in interface org.openprovenance.rdf.Process

The cause of a Process by means of a WasControlledBy edge.

setEffectWasDerivedFrom(Set<? extends Artifact>) - Method in interface org.openprovenance.rdf.WasDerivedFrom

The effect of a WasDerivedFrom edge.

setEffectWasDerivedFromInverse(Set<? extends WasDerivedFrom>) - Method in interface org.openprovenance.rdf.Artifact

The cause of an Artifact by means of a WasDerivedFrom edge.

setEffectWasGeneratedBy(Artifact) - Method in interface org.openprovenance.rdf.WasGeneratedBy

The effect of a WasGeneratedBy edge.

setEffectWasGeneratedByInverse(Set<? extends WasGeneratedBy>) - Method in interface org.openprovenance.rdf.Artifact

The cause of an Artifact by means of a WasGeneratedBy edge.

setEffectWasTriggeredBy(Process) - Method in interface org.openprovenance.rdf.WasTriggeredBy

The effect of a WasTriggeredBy edge.

setEffectWasTriggeredByInverse(Set<? extends WasTriggeredBy>) - Method in interface org.openprovenance.rdf.Process

The cause of a Process by means of a WasTriggeredBy edge.

setEncoding(String) - Method in class org.openprovenance.elmo.RdfValue

setEncoding(String) - Method in class org.openprovenance.model.Value

Sets the value of the encoding property.

setEncoding(URI) - Method in interface org.openprovenance.rdf.AValue

Denotes how a serialization was constructed.

setEndTime(OTime) - Method in class org.openprovenance.elmo.RdfWasControlledBy

setEndTime(OTime) - Method in class org.openprovenance.model.WasControlledBy

Sets the value of the endTime property.

setEndTime(OTime) - Method in interface org.openprovenance.rdf.WasControlledBy

The time at which the agent ended controlling a process.

setExactlyAt(XMLGregorianCalendar) - Method in class org.openprovenance.elmo.RdfOTime

setExactlyAt(XMLGregorianCalendar) - Method in class org.openprovenance.model.OTime

Sets the value of the exactlyAt property.

setExactlyAt(XMLGregorianCalendar) - Method in interface org.openprovenance.rdf.OTime

The event occurred exactly at this time.

setExternalSubject(String) - Method in class org.openprovenance.model.Annotation

Sets the value of the externalSubject property.

setFields(XMLGregorianCalendar, XMLGregorianCalendar, XMLGregorianCalendar) - Method in class org.openprovenance.elmo.RdfOTime

setFields(String, Object) - Method in class org.openprovenance.elmo.RdfProperty

setFields(ArtifactRef, ProcessRef, Role) - Method in class org.openprovenance.elmo.RdfUsed

setFields(Object, String) - Method in class org.openprovenance.elmo.RdfValue

setFields(AgentRef, ProcessRef, Role) - Method in class org.openprovenance.elmo.RdfWasControlledBy

setFields(ProcessRef, ArtifactRef, Role) - Method in class org.openprovenance.elmo.RdfWasGeneratedBy

setFormats(Set<?>) - Method in interface org.openprovenance.dc.DcResource

setGeneratedRole(Set<? extends Role>) - Method in class org.openprovenance.elmo.RdfWasTriggeredBy

setGraphName(String) - Method in class org.openprovenance.model.printer.OPMPrinterConfiguration

Sets the value of the graphName property.

setHasAccount(Set<? extends Account>) - Method in interface org.openprovenance.rdf.OPMGraph

Property that denotes the constituency relationship between an OPM graph and an account, meaning that the object of this property is an account of the subject.

setHasAgent(Set<? extends Agent>) - Method in interface org.openprovenance.rdf.OPMGraph

Property that denotes the constituency relationship between an OPM graph and an agent, meaning that the object of this property is an agent of the subject.

setHasArtifact(Set<? extends Artifact>) - Method in interface org.openprovenance.rdf.OPMGraph

Property that denotes the constituency relationship between an OPM graph and an artifact, meaning that the object of this property is an artifact of the subject.

setHasConstituent(Set<?>) - Method in interface org.openprovenance.rdf.OPMGraph

(Abstract) Property that denotes the constituency relationship between an OPM graph and one of its constituent entity, meaning that the object of this property is a constituent of the subject.

setHasDependency(Set<? extends Edge>) - Method in interface org.openprovenance.rdf.OPMGraph

Property that denotes the constituency relationship between an OPM graph and an edge, meaning that the object of this property is an edge of the subject.

setHasProcess(Set<? extends Process>) - Method in interface org.openprovenance.rdf.OPMGraph

Property that denotes the constituency relationship between an OPM graph and a process, meaning that the object of this property is a process of the subject.

setId(String) - Method in class org.openprovenance.elmo.RdfAccount

setId(String) - Method in class org.openprovenance.elmo.RdfAgent

setId(String) - Method in class org.openprovenance.elmo.RdfAnnotation

setId(String) - Method in class org.openprovenance.elmo.RdfArtifact

setId(String) - Method in class org.openprovenance.elmo.RdfEmbeddedAnnotation

setId(String) - Method in class org.openprovenance.elmo.RdfOPMGraph

setId(String) - Method in class org.openprovenance.elmo.RdfOTime

setId(String) - Method in class org.openprovenance.elmo.RdfProcess

setId(String) - Method in class org.openprovenance.elmo.RdfProperty

setId(String) - Method in class org.openprovenance.elmo.RdfRole

setId(String) - Method in class org.openprovenance.elmo.RdfUsed

setId(String) - Method in class org.openprovenance.elmo.RdfValue

setId(String) - Method in class org.openprovenance.elmo.RdfWasControlledBy

setId(String) - Method in class org.openprovenance.elmo.RdfWasDerivedFrom

setId(String) - Method in class org.openprovenance.elmo.RdfWasGeneratedBy

setId(String) - Method in class org.openprovenance.elmo.RdfWasTriggeredBy

setId(String) - Method in class org.openprovenance.model.Account

Sets the value of the id property.

setId(String) - Method in class org.openprovenance.model.Agent

Sets the value of the id property.

setId(String) - Method in class org.openprovenance.model.Artifact

Sets the value of the id property.

setId(String) - Method in class org.openprovenance.model.EmbeddedAnnotation

Sets the value of the id property.

setId(String) - Method in interface org.openprovenance.model.Identifiable

setId(String) - Method in class org.openprovenance.model.OPMGraph

Sets the value of the id property.

setId(String) - Method in class org.openprovenance.model.Process

Sets the value of the id property.

setId(String) - Method in class org.openprovenance.model.Role

Sets the value of the id property.

setId(String) - Method in class org.openprovenance.model.Used

Sets the value of the id property.

setId(String) - Method in class org.openprovenance.model.UsedStar

Sets the value of the id property.

setId(String) - Method in class org.openprovenance.model.WasControlledBy

Sets the value of the id property.

setId(String) - Method in class org.openprovenance.model.WasDerivedFrom

Sets the value of the id property.

setId(String) - Method in class org.openprovenance.model.WasDerivedFromStar

Sets the value of the id property.

setId(String) - Method in class org.openprovenance.model.WasGeneratedBy

Sets the value of the id property.

setId(String) - Method in class org.openprovenance.model.WasGeneratedByStar

Sets the value of the id property.

setId(String) - Method in class org.openprovenance.model.WasTriggeredBy

Sets the value of the id property.

setId(String) - Method in class org.openprovenance.model.WasTriggeredByStar

Sets the value of the id property.

setIdForCompactAnnotation(EmbeddedAnnotation, String) - Method in class org.openprovenance.model.OPMFactory

setKey(String) - Method in class org.openprovenance.elmo.RdfProperty

setKey(String) - Method in class org.openprovenance.model.Property

Sets the value of the key property.

setKey(Object) - Method in interface org.openprovenance.rdf.Property

The key of a Property.

setLabels(Set<? extends String>) - Method in interface org.openprovenance.rdf.Annotable

This property provides a human-readable version of an OPM entity.

setLocalSubject(Object) - Method in class org.openprovenance.elmo.RdfAnnotation

setLocalSubject(Object) - Method in class org.openprovenance.model.Annotation

Sets the value of the localSubject property.

setName(String) - Method in class org.openprovenance.model.printer.AccountColorMapEntry

Sets the value of the name property.

setName(String) - Method in class org.openprovenance.model.printer.MapEntry

Sets the value of the name property.

setNodes(ArtifactRef, ArtifactRef) - Method in class org.openprovenance.elmo.RdfWasDerivedFrom

setNodes(ProcessRef, ProcessRef) - Method in class org.openprovenance.elmo.RdfWasTriggeredBy

setNoEarlierThan(XMLGregorianCalendar) - Method in class org.openprovenance.elmo.RdfOTime

setNoEarlierThan(XMLGregorianCalendar) - Method in class org.openprovenance.model.OTime

Sets the value of the noEarlierThan property.

setNoEarlierThan(XMLGregorianCalendar) - Method in interface org.openprovenance.rdf.OTime

the event occurred no earlier than this time

setNoLaterThan(XMLGregorianCalendar) - Method in class org.openprovenance.elmo.RdfOTime

setNoLaterThan(XMLGregorianCalendar) - Method in class org.openprovenance.model.OTime

Sets the value of the noLaterThan property.

setNoLaterThan(XMLGregorianCalendar) - Method in interface org.openprovenance.rdf.OTime

the event occurred no later than this time

setPnames(Set<? extends URI>) - Method in interface org.openprovenance.rdf.Annotable

The persistent name of an entity.

setPrefixes(RDFHandler, Collection<String[]>) - Method in class org.openprovenance.elmo.RepositoryHelper

setPrintRole(Boolean) - Method in class org.openprovenance.model.printer.EdgeStyleMapEntry

Sets the value of the printRole property.

setProcesses(Processes) - Method in class org.openprovenance.model.OPMGraph

Sets the value of the processes property.

setProcesses(ProcessMap) - Method in class org.openprovenance.model.printer.OPMPrinterConfiguration

Sets the value of the processes property.

setProfiles(Set<? extends String>) - Method in interface org.openprovenance.rdf.Annotable

This property applies to an OPM graph and denotes a profile that is supported by that graph.

setProperties(Set<? extends Property>) - Method in interface org.openprovenance.rdf.Annotation

Object Property that associates an Annotation instance with a (set of) Propery(ies).

setRef(Object) - Method in class org.openprovenance.model.AccountRef

Sets the value of the ref property.

setRef(Object) - Method in class org.openprovenance.model.AgentRef

Sets the value of the ref property.

setRef(Object) - Method in class org.openprovenance.model.AnnotationRef

Sets the value of the ref property.

setRef(Object) - Method in class org.openprovenance.model.ArtifactRef

Sets the value of the ref property.

setRef(Object) - Method in class org.openprovenance.model.DependencyRef

Sets the value of the ref property.

setRef(Object) - Method in class org.openprovenance.model.OPMGraphRef

Sets the value of the ref property.

setRef(Object) - Method in class org.openprovenance.model.ProcessRef

Sets the value of the ref property.

setRef(Object) - Method in class org.openprovenance.model.RoleRef

Sets the value of the ref property.

setRole(Role) - Method in class org.openprovenance.elmo.RdfUsed

setRole(Role) - Method in class org.openprovenance.elmo.RdfWasControlledBy

setRole(Role) - Method in class org.openprovenance.elmo.RdfWasGeneratedBy

setRole(Role) - Method in class org.openprovenance.model.Used

Sets the value of the role property.

setRole(Role) - Method in class org.openprovenance.model.WasControlledBy

Sets the value of the role property.

setRole(Role) - Method in class org.openprovenance.model.WasGeneratedBy

Sets the value of the role property.

setRole(Role) - Method in interface org.openprovenance.rdf.UsedOrWasControlledByOrWasGeneratedBy

The role of an edge.

setStartTime(OTime) - Method in class org.openprovenance.elmo.RdfWasControlledBy

setStartTime(OTime) - Method in class org.openprovenance.model.WasControlledBy

Sets the value of the startTime property.

setStartTime(OTime) - Method in interface org.openprovenance.rdf.WasControlledBy

The time at which the agent began controlling a process.

setStyle(String) - Method in class org.openprovenance.model.printer.EdgeStyleMapEntry

Sets the value of the style property.

setTermsCreated(Set<?>) - Method in interface org.openprovenance.dc.DcResource

setTermsModified(Set<?>) - Method in interface org.openprovenance.dc.DcResource

setTermsTitle(Set<?>) - Method in interface org.openprovenance.dc.DcResource

setTime(OTime) - Method in class org.openprovenance.elmo.RdfUsed

setTime(OTime) - Method in class org.openprovenance.elmo.RdfWasGeneratedBy

setTime(OTime) - Method in class org.openprovenance.model.Used

Sets the value of the time property.

setTime(OTime) - Method in class org.openprovenance.model.WasDerivedFrom

Sets the value of the time property.

setTime(OTime) - Method in class org.openprovenance.model.WasGeneratedBy

Sets the value of the time property.

setTime(OTime) - Method in class org.openprovenance.model.WasTriggeredBy

Sets the value of the time property.

setTime(OTime) - Method in interface org.openprovenance.rdf.EventEdge

A piece of timing information associated with an EventEdge.

setTitles(Set<?>) - Method in interface org.openprovenance.dc.DcResource

setType(String) - Method in class org.openprovenance.model.printer.EdgeStyleMapEntry

Sets the value of the type property.

setTypes(Set<? extends URI>) - Method in interface org.openprovenance.rdf.Annotable

The subtype of an entity.

setUp() - Method in class org.openprovenance.jena.TripleStore

setUpReasonerForFile(String, String, String, String) - Method in class org.openprovenance.jena.TripleStore

Initializes reasoner with OPMV and OPMO ontology, and loads rdf file.

setUsed(Set<? extends Artifact>) - Method in interface org.openprovenance.rdf.Process

setUsedStar(Set<? extends Artifact>) - Method in interface org.openprovenance.rdf.Process

A multi-step used property.

setValue(Object) - Method in class org.openprovenance.elmo.RdfProperty

setValue(String) - Method in class org.openprovenance.elmo.RdfRole

setValue(String) - Method in class org.openprovenance.model.Label

Sets the value of the value property.

setValue(String) - Method in class org.openprovenance.model.PName

Sets the value of the value property.

setValue(String) - Method in class org.openprovenance.model.printer.AgentMapEntry

Sets the value of the value property.

setValue(String) - Method in class org.openprovenance.model.printer.ArtifactMapEntry

Sets the value of the value property.

setValue(String) - Method in class org.openprovenance.model.printer.MapEntry

Sets the value of the value property.

setValue(String) - Method in class org.openprovenance.model.printer.ProcessMapEntry

Sets the value of the value property.

setValue(String) - Method in class org.openprovenance.model.Profile

Sets the value of the value property.

setValue(Object) - Method in class org.openprovenance.model.Property

Sets the value of the value property.

setValue(String) - Method in class org.openprovenance.model.Role

Sets the value of the value property.

setValue(String) - Method in class org.openprovenance.model.Type

Sets the value of the value property.

setValue(Object) - Method in interface org.openprovenance.rdf.PropertyOrRole

the value of a role or a property

setVoidExampleResource(Set<?>) - Method in interface org.openprovenance.dc.DcResource

setWasDerivedFrom(Set<? extends Artifact>) - Method in interface org.openprovenance.rdf.Artifact

setWasDerivedFromStar(Set<? extends Artifact>) - Method in interface org.openprovenance.rdf.Artifact

the transitive closure of wasDerivedFrom

setWasGeneratedBy(Set<? extends Process>) - Method in interface org.openprovenance.rdf.Artifact

setWasGeneratedByStar(Set<? extends Process>) - Method in interface org.openprovenance.rdf.Artifact

A multi-step wasGeneratedBy edge.

setWasTriggeredBy(Set<?>) - Method in interface org.openprovenance.dc.DcResource

sortAccounts(List<Account>) - Method in class org.openprovenance.model.Normalise

sortAnnotations(List<JAXBElement<? extends EmbeddedAnnotation>>) - Method in class org.openprovenance.model.Normalise

sortAnnotationsIGNORE(List<EmbeddedAnnotation>) - Method in class org.openprovenance.model.Normalise

sortById(List) - Method in class org.openprovenance.model.Normalise

sortByRef(List) - Method in class org.openprovenance.model.Normalise

sortEdges(List) - Method in class org.openprovenance.model.Normalise

sortGraph(OPMGraph) - Method in class org.openprovenance.model.Normalise

sortProperties(List<Property>) - Method in class org.openprovenance.model.Normalise

startTime - Variable in class org.openprovenance.model.WasControlledBy

style - Variable in class org.openprovenance.model.printer.EdgeStyleMapEntry

T

time - Variable in class org.openprovenance.model.Used

time - Variable in class org.openprovenance.model.WasDerivedFrom

time - Variable in class org.openprovenance.model.WasGeneratedBy

time - Variable in class org.openprovenance.model.WasTriggeredBy

toRdf(Annotable) - Method in interface org.openprovenance.elmo.CompactAnnotation

toRdf(Annotable) - Method in class org.openprovenance.elmo.RdfLabel

toRdf(Annotable) - Method in class org.openprovenance.elmo.RdfPName

toRdf(Annotable) - Method in class org.openprovenance.elmo.RdfProfile

toRdf(Annotable) - Method in class org.openprovenance.elmo.RdfType

toRdf_DELETE(Annotable) - Method in class org.openprovenance.elmo.RdfLabel

toRdf_DELETE(Annotable) - Method in class org.openprovenance.elmo.RdfPName

toRdf_DELETE(Annotable) - Method in class org.openprovenance.elmo.RdfProfile

toString() - Method in class org.openprovenance.elmo.XMLLiteral

toString(ToStringBuilder) - Method in class org.openprovenance.model.Account

toString() - Method in class org.openprovenance.model.Account

toString(ToStringBuilder) - Method in class org.openprovenance.model.AccountRef

toString() - Method in class org.openprovenance.model.AccountRef

toString(ToStringBuilder) - Method in class org.openprovenance.model.Accounts

toString() - Method in class org.openprovenance.model.Accounts

toString(ToStringBuilder) - Method in class org.openprovenance.model.Agent

toString() - Method in class org.openprovenance.model.Agent

toString(ToStringBuilder) - Method in class org.openprovenance.model.AgentRef

toString() - Method in class org.openprovenance.model.AgentRef

toString(ToStringBuilder) - Method in class org.openprovenance.model.Agents

toString() - Method in class org.openprovenance.model.Agents

toString(ToStringBuilder) - Method in class org.openprovenance.model.Annotation

toString() - Method in class org.openprovenance.model.Annotation

toString(ToStringBuilder) - Method in class org.openprovenance.model.AnnotationRef

toString() - Method in class org.openprovenance.model.AnnotationRef

toString(ToStringBuilder) - Method in class org.openprovenance.model.Annotations

toString() - Method in class org.openprovenance.model.Annotations

toString(ToStringBuilder) - Method in class org.openprovenance.model.Artifact

toString() - Method in class org.openprovenance.model.Artifact

toString(ToStringBuilder) - Method in class org.openprovenance.model.ArtifactRef

toString() - Method in class org.openprovenance.model.ArtifactRef

toString(ToStringBuilder) - Method in class org.openprovenance.model.Artifacts

toString() - Method in class org.openprovenance.model.Artifacts

toString(ToStringBuilder) - Method in class org.openprovenance.model.Dependencies

toString() - Method in class org.openprovenance.model.Dependencies

toString(ToStringBuilder) - Method in class org.openprovenance.model.DependencyRef

toString() - Method in class org.openprovenance.model.DependencyRef

toString(ToStringBuilder) - Method in class org.openprovenance.model.EmbeddedAnnotation

toString() - Method in class org.openprovenance.model.EmbeddedAnnotation

toString(ToStringBuilder) - Method in class org.openprovenance.model.Label

toString() - Method in class org.openprovenance.model.Label

toString(ToStringBuilder) - Method in class org.openprovenance.model.OPMGraph

toString() - Method in class org.openprovenance.model.OPMGraph

toString(ToStringBuilder) - Method in class org.openprovenance.model.OPMGraphRef

toString() - Method in class org.openprovenance.model.OPMGraphRef

toString(ToStringBuilder) - Method in class org.openprovenance.model.OTime

toString() - Method in class org.openprovenance.model.OTime

toString(ToStringBuilder) - Method in class org.openprovenance.model.Overlaps

toString() - Method in class org.openprovenance.model.Overlaps

toString(ToStringBuilder) - Method in class org.openprovenance.model.PName

toString() - Method in class org.openprovenance.model.PName

toString(ToStringBuilder) - Method in class org.openprovenance.model.printer.AccountColorMapEntry

toString() - Method in class org.openprovenance.model.printer.AccountColorMapEntry

toString(ToStringBuilder) - Method in class org.openprovenance.model.printer.AccountMap

toString() - Method in class org.openprovenance.model.printer.AccountMap

toString(ToStringBuilder) - Method in class org.openprovenance.model.printer.AgentMap

toString() - Method in class org.openprovenance.model.printer.AgentMap

toString(ToStringBuilder) - Method in class org.openprovenance.model.printer.AgentMapEntry

toString() - Method in class org.openprovenance.model.printer.AgentMapEntry

toString(ToStringBuilder) - Method in class org.openprovenance.model.printer.ArtifactMap

toString() - Method in class org.openprovenance.model.printer.ArtifactMap

toString(ToStringBuilder) - Method in class org.openprovenance.model.printer.ArtifactMapEntry

toString() - Method in class org.openprovenance.model.printer.ArtifactMapEntry

toString(ToStringBuilder) - Method in class org.openprovenance.model.printer.EdgeStyleMap

toString() - Method in class org.openprovenance.model.printer.EdgeStyleMap

toString(ToStringBuilder) - Method in class org.openprovenance.model.printer.EdgeStyleMapEntry

toString() - Method in class org.openprovenance.model.printer.EdgeStyleMapEntry

toString(ToStringBuilder) - Method in class org.openprovenance.model.printer.Map

toString() - Method in class org.openprovenance.model.printer.Map

toString(ToStringBuilder) - Method in class org.openprovenance.model.printer.MapEntry

toString() - Method in class org.openprovenance.model.printer.MapEntry

toString(ToStringBuilder) - Method in class org.openprovenance.model.printer.OPMPrinterConfiguration

toString() - Method in class org.openprovenance.model.printer.OPMPrinterConfiguration

toString(ToStringBuilder) - Method in class org.openprovenance.model.printer.ProcessMap

toString() - Method in class org.openprovenance.model.printer.ProcessMap

toString(ToStringBuilder) - Method in class org.openprovenance.model.printer.ProcessMapEntry

toString() - Method in class org.openprovenance.model.printer.ProcessMapEntry

toString(ToStringBuilder) - Method in class org.openprovenance.model.Process

toString() - Method in class org.openprovenance.model.Process

toString(ToStringBuilder) - Method in class org.openprovenance.model.Processes

toString() - Method in class org.openprovenance.model.Processes

toString(ToStringBuilder) - Method in class org.openprovenance.model.ProcessRef

toString() - Method in class org.openprovenance.model.ProcessRef

toString(ToStringBuilder) - Method in class org.openprovenance.model.Profile

toString() - Method in class org.openprovenance.model.Profile

toString(ToStringBuilder) - Method in class org.openprovenance.model.Property

toString() - Method in class org.openprovenance.model.Property

toString(ToStringBuilder) - Method in class org.openprovenance.model.Role

toString() - Method in class org.openprovenance.model.Role

toString(ToStringBuilder) - Method in class org.openprovenance.model.RoleRef

toString() - Method in class org.openprovenance.model.RoleRef

toString(ToStringBuilder) - Method in class org.openprovenance.model.Type

toString() - Method in class org.openprovenance.model.Type

toString(ToStringBuilder) - Method in class org.openprovenance.model.Used

toString() - Method in class org.openprovenance.model.Used

toString(ToStringBuilder) - Method in class org.openprovenance.model.UsedStar

toString() - Method in class org.openprovenance.model.UsedStar

toString(ToStringBuilder) - Method in class org.openprovenance.model.Value

toString() - Method in class org.openprovenance.model.Value

toString(ToStringBuilder) - Method in class org.openprovenance.model.WasControlledBy

toString() - Method in class org.openprovenance.model.WasControlledBy

toString(ToStringBuilder) - Method in class org.openprovenance.model.WasDerivedFrom

toString() - Method in class org.openprovenance.model.WasDerivedFrom

toString(ToStringBuilder) - Method in class org.openprovenance.model.WasDerivedFromStar

toString() - Method in class org.openprovenance.model.WasDerivedFromStar

toString(ToStringBuilder) - Method in class org.openprovenance.model.WasGeneratedBy

toString() - Method in class org.openprovenance.model.WasGeneratedBy

toString(ToStringBuilder) - Method in class org.openprovenance.model.WasGeneratedByStar

toString() - Method in class org.openprovenance.model.WasGeneratedByStar

toString(ToStringBuilder) - Method in class org.openprovenance.model.WasTriggeredBy

toString() - Method in class org.openprovenance.model.WasTriggeredBy

toString(ToStringBuilder) - Method in class org.openprovenance.model.WasTriggeredByStar

toString() - Method in class org.openprovenance.model.WasTriggeredByStar

TripleStore - Class in org.openprovenance.jena

A class to set up a Jena triple store and a pellet reasoner + a some helper functions.

TripleStore() - Constructor for class org.openprovenance.jena.TripleStore

type - Variable in class org.openprovenance.model.printer.EdgeStyleMapEntry

Type - Class in org.openprovenance.model

Java class for Type complex type.

Type() - Constructor for class org.openprovenance.model.Type

TYPE_PROPERTY - Static variable in interface org.openprovenance.model.CommonURIs

TypeURI - Enum in org.openprovenance.profile.collections

Java class for typeURI.

U

union(OPMGraph, OPMGraph) - Method in class org.openprovenance.model.OPMUtilities

union(Accounts, Accounts) - Method in class org.openprovenance.model.OPMUtilities

union(Agents, Agents) - Method in class org.openprovenance.model.OPMUtilities

union(Processes, Processes) - Method in class org.openprovenance.model.OPMUtilities

union(Artifacts, Artifacts) - Method in class org.openprovenance.model.OPMUtilities

union(Dependencies, Dependencies) - Method in class org.openprovenance.model.OPMUtilities

updateFromRdfGraph(OPMGraph) - Method in class org.openprovenance.model.Normalise

updateOriginalGraph(OPMGraph) - Method in class org.openprovenance.model.Normalise

USAGE - Static variable in class org.openprovenance.model.OPMToDot

Used - Class in org.openprovenance.model

Java class for Used complex type.

Used() - Constructor for class org.openprovenance.model.Used

Used - Interface in org.openprovenance.rdf

A “used” edge from process to an artifact is a relationship intended to indicate that the process required the availability of the artifact to be able to complete its execution.

usedIdPrefix - Static variable in class org.openprovenance.model.OPMFactory

UsedOrWasControlledByOrWasGeneratedBy - Interface in org.openprovenance.rdf

UsedOrWasGeneratedBy - Interface in org.openprovenance.rdf

usedOrWasGeneratedByOrWasTriggeredBy - Variable in class org.openprovenance.model.Dependencies

UsedStar - Class in org.openprovenance.model

Java class for UsedStar complex type.

UsedStar() - Constructor for class org.openprovenance.model.UsedStar

usePrefixMapper - Variable in class org.openprovenance.model.OPMSerialiser

V

validate() - Method in class org.openprovenance.jena.TripleStore

validateOPMGraph(String[], File) - Method in class org.openprovenance.model.OPMDeserialiser

value - Variable in class org.openprovenance.model.Label

value - Variable in class org.openprovenance.model.PName

value - Variable in class org.openprovenance.model.printer.AgentMapEntry

value - Variable in class org.openprovenance.model.printer.ArtifactMapEntry

value - Variable in class org.openprovenance.model.printer.MapEntry

value - Variable in class org.openprovenance.model.printer.ProcessMapEntry

value - Variable in class org.openprovenance.model.Profile

value - Variable in class org.openprovenance.model.Property

value - Variable in class org.openprovenance.model.Role

value - Variable in class org.openprovenance.model.Type

Value - Class in org.openprovenance.model

Java class for Value complex type.

Value() - Constructor for class org.openprovenance.model.Value

value() - Method in enum org.openprovenance.profile.collections.TypeURI

VALUE_PROPERTY - Static variable in interface org.openprovenance.model.CommonURIs

valueOf(String) - Static method in enum org.openprovenance.profile.collections.TypeURI

Returns the enum constant of this type with the specified name.

values() - Static method in enum org.openprovenance.profile.collections.TypeURI

Returns an array containing the constants of this enum type, in the order they are declared.

view(OPMGraph, Accounts) - Method in class org.openprovenance.model.OPMUtilities

W

WasControlledBy - Class in org.openprovenance.model

Java class for WasControlledBy complex type.

WasControlledBy() - Constructor for class org.openprovenance.model.WasControlledBy

WasControlledBy - Interface in org.openprovenance.rdf

An edge “was controlled by” from a process P to an agent Ag is a dependency that indicates that the start and end of process P was controlled by agent Ag.

wasControlledByIdPrefix - Static variable in class org.openprovenance.model.OPMFactory

WASCOPYOF - Static variable in interface org.openprovenance.model.collections.CollectionURIs

WasDerivedFrom - Class in org.openprovenance.model

Java class for WasDerivedFrom complex type.

WasDerivedFrom() - Constructor for class org.openprovenance.model.WasDerivedFrom

WasDerivedFrom - Interface in org.openprovenance.rdf

An edge “was derived from” from artifact A2 to artifact A1 is a relationship that indicates that artifact A1 needs to have been generated for A2 to be generated.

wasDerivedFromIdPrefix - Static variable in class org.openprovenance.model.OPMFactory

WasDerivedFromStar - Class in org.openprovenance.model

Java class for WasDerivedFromStar complex type.

WasDerivedFromStar() - Constructor for class org.openprovenance.model.WasDerivedFromStar

wasGenerateByIdPrefix - Static variable in class org.openprovenance.model.OPMFactory

WasGeneratedBy - Class in org.openprovenance.model

Java class for WasGeneratedBy complex type.

WasGeneratedBy() - Constructor for class org.openprovenance.model.WasGeneratedBy

WasGeneratedBy - Interface in org.openprovenance.rdf

A “was generated by” edge from an artifact to a process is a relationship intended to mean that the process was required to initiate its execution for the artifact to have been generated.

WasGeneratedByStar - Class in org.openprovenance.model

Java class for WasGeneratedByStar complex type.

WasGeneratedByStar() - Constructor for class org.openprovenance.model.WasGeneratedByStar

WASIDENTICALTO - Static variable in interface org.openprovenance.model.collections.CollectionURIs

WASMAPPEDFROM - Static variable in interface org.openprovenance.model.collections.CollectionURIs

WASPARTOF - Static variable in interface org.openprovenance.model.collections.CollectionURIs

WasTriggeredBy - Class in org.openprovenance.model

Java class for WasTriggeredBy complex type.

WasTriggeredBy() - Constructor for class org.openprovenance.model.WasTriggeredBy

WasTriggeredBy - Interface in org.openprovenance.rdf

An edge “was triggered by” from a process P2 to a process P1 is a causal dependency that indicates that the start of process P1 was required for P2 to be able to complete.

wasTriggeredByIdPrefix - Static variable in class org.openprovenance.model.OPMFactory

WasTriggeredByStar - Class in org.openprovenance.model

Java class for WasTriggeredByStar complex type.

WasTriggeredByStar() - Constructor for class org.openprovenance.model.WasTriggeredByStar

write(OutputStream) - Method in class org.openprovenance.jena.TripleStore

X

XMLLiteral - Class in org.openprovenance.elmo

XMLLiteral support was dropped because they where being mapped to org.w3c.dom.Document and did not support XML fragments (multiple roots elements).

XMLLiteral(String) - Constructor for class org.openprovenance.elmo.XMLLiteral

XMLLiteral(Document) - Constructor for class org.openprovenance.elmo.XMLLiteral

xmlToN3(String, String, String, String) - Method in class org.openprovenance.elmo.RepositoryHelper

xmlToRdf(String, String, String, String) - Method in class org.openprovenance.elmo.RepositoryHelper

xmlToRdf(String, String, String, String, RDFFormat) - Method in class org.openprovenance.elmo.RepositoryHelper

_

_default - Variable in class org.openprovenance.model.printer.EdgeStyleMap

A B C D E F G H I J K L M N O P Q R S T U V W X _