A B C D E F G H I J L M N O P R S T U V W X _

A

ACCESSOR - Static variable in interface org.openprovenance.model.collections.CollectionURIs

Account - Class in org.openprovenance.model

Java class for Account complex type.

Account() - Constructor for class org.openprovenance.model.Account

account - Variable in class org.openprovenance.model.Accounts

account - Variable in class org.openprovenance.model.Agent

account - Variable in class org.openprovenance.model.Artifact

account - Variable in class org.openprovenance.model.EmbeddedAnnotation

account - Variable in class org.openprovenance.model.Overlaps

account - Variable in class org.openprovenance.model.printer.AccountMap

account - Variable in class org.openprovenance.model.Process

account - Variable in class org.openprovenance.model.Used

account - Variable in class org.openprovenance.model.UsedStar

account - Variable in class org.openprovenance.model.WasControlledBy

account - Variable in class org.openprovenance.model.WasDerivedFrom

account - Variable in class org.openprovenance.model.WasDerivedFromStar

account - Variable in class org.openprovenance.model.WasGeneratedBy

account - Variable in class org.openprovenance.model.WasGeneratedByStar

account - Variable in class org.openprovenance.model.WasTriggeredBy

account - Variable in class org.openprovenance.model.WasTriggeredByStar

Account - Interface in org.openprovenance.rdf

AccountColorMapEntry - Class in org.openprovenance.model.printer

Java class for AccountColorMapEntry complex type.

AccountColorMapEntry() - Constructor for class org.openprovenance.model.printer.AccountColorMapEntry

AccountMap - Class in org.openprovenance.model.printer

Java class for AccountMap complex type.

AccountMap() - Constructor for class org.openprovenance.model.printer.AccountMap

accountMembership(ArtifactRef, OPMGraph) - Method in class org.openprovenance.model.OPMUtilities

AccountRef - Class in org.openprovenance.model

Java class for AccountRef complex type.

AccountRef() - Constructor for class org.openprovenance.model.AccountRef

Accounts - Class in org.openprovenance.model

Java class for Accounts complex type.

Accounts() - Constructor for class org.openprovenance.model.Accounts

accounts - Variable in class org.openprovenance.model.OPMGraph

accounts - Variable in class org.openprovenance.model.printer.OPMPrinterConfiguration

addAccount(String, Account) - Method in class org.openprovenance.model.IndexedOPMGraph

addAccount(Account) - Method in class org.openprovenance.model.IndexedOPMGraph

addAccounts(HasAccounts, Collection<AccountRef>) - Method in class org.openprovenance.elmo.RdfOPMFactory

addAccounts(AnnotationOrEdgeOrNode, List<AccountRef>) - Method in class org.openprovenance.elmo.RdfOPMFactory

addAccounts(HasAccounts, Collection<Account>, Object) - Method in class org.openprovenance.model.OPMFactory

addAccounts(HasAccounts, Collection<AccountRef>) - Method in class org.openprovenance.model.OPMFactory

addAgent(Agent) - Method in class org.openprovenance.model.IndexedOPMGraph

addAgent(String, Agent) - Method in class org.openprovenance.model.IndexedOPMGraph

addAgentColor(Agent, HashMap<String, String>) - Method in class org.openprovenance.model.OPMToDot

addAgentLabel(Agent, HashMap<String, String>) - Method in class org.openprovenance.model.OPMToDot

addAgentShape(Agent, HashMap<String, String>) - Method in class org.openprovenance.model.OPMToDot

addAnnotation(Annotable, JAXBElement<? extends EmbeddedAnnotation>) - Method in class org.openprovenance.elmo.RdfOPMFactory

addAnnotation(Annotable, Label) - Method in class org.openprovenance.elmo.RdfOPMFactory

addAnnotation(Annotable, Type) - Method in class org.openprovenance.elmo.RdfOPMFactory

addAnnotation(Annotable, Value) - Method in class org.openprovenance.elmo.RdfOPMFactory

addAnnotation(Annotable, Annotation) - Method in class org.openprovenance.elmo.RdfOPMFactory

addAnnotation(Annotable, EmbeddedAnnotation) - Method in class org.openprovenance.elmo.RdfOPMFactory

Add annotation to an annotable JAXB Bean and its corresponding RDF facade.

addAnnotation(Annotable, Label) - Method in class org.openprovenance.model.OPMFactory

addAnnotation(Annotable, Value) - Method in class org.openprovenance.model.OPMFactory

addAnnotation(Annotable, Profile) - Method in class org.openprovenance.model.OPMFactory

addAnnotation(Annotable, PName) - Method in class org.openprovenance.model.OPMFactory

addAnnotation(Annotable, EmbeddedAnnotation) - Method in class org.openprovenance.model.OPMFactory

addAnnotation(Annotable, JAXBElement<? extends EmbeddedAnnotation>) - Method in class org.openprovenance.model.OPMFactory

addAnnotation(Annotable, List<EmbeddedAnnotation>) - Method in class org.openprovenance.model.OPMFactory

addAnnotationColor(EmbeddedAnnotation, HashMap<String, String>) - Method in class org.openprovenance.model.OPMToDot

addAnnotationLabel(EmbeddedAnnotation, HashMap<String, String>) - Method in class org.openprovenance.model.OPMToDot

addAnnotationLinkProperties(EmbeddedAnnotation, HashMap<String, String>) - Method in class org.openprovenance.model.OPMToDot

addAnnotations(Annotable, List<JAXBElement<? extends EmbeddedAnnotation>>) - Method in class org.openprovenance.model.OPMFactory

addAnnotationShape(EmbeddedAnnotation, HashMap<String, String>) - Method in class org.openprovenance.model.OPMToDot

addArtifact(Artifact) - Method in class org.openprovenance.model.IndexedOPMGraph

addArtifact(String, Artifact) - Method in class org.openprovenance.model.IndexedOPMGraph

addArtifactColor(Artifact, HashMap<String, String>) - Method in class org.openprovenance.model.OPMToDot

addArtifactLabel(Artifact, HashMap<String, String>) - Method in class org.openprovenance.model.OPMToDot

addArtifactShape(Artifact, HashMap<String, String>) - Method in class org.openprovenance.model.OPMToDot

addCompactAnnotation(Annotable, List<EmbeddedAnnotation>) - Method in class org.openprovenance.model.OPMFactory

addEdgeAttributes(String, Edge, HashMap<String, String>) - Method in class org.openprovenance.model.OPMToDot

addEdgeLabel(Edge, HashMap<String, String>) - Method in class org.openprovenance.model.OPMToDot

addNewAnnotations(Annotable, List<JAXBElement<? extends EmbeddedAnnotation>>) - Method in class org.openprovenance.elmo.RdfOPMFactory

addNewAnnotations(Annotable, List<JAXBElement<? extends EmbeddedAnnotation>>) - Method in class org.openprovenance.model.OPMFactory

addProcess(Process) - Method in class org.openprovenance.model.IndexedOPMGraph

addProcess(String, Process) - Method in class org.openprovenance.model.IndexedOPMGraph

addProcessColor(Process, HashMap<String, String>) - Method in class org.openprovenance.model.OPMToDot

addProcessLabel(Process, HashMap<String, String>) - Method in class org.openprovenance.model.OPMToDot

addProcessShape(Process, HashMap<String, String>) - Method in class org.openprovenance.model.OPMToDot

addProperty(EmbeddedAnnotation, Property) - Method in class org.openprovenance.elmo.RdfOPMFactory

addProperty(Annotation, Property) - Method in class org.openprovenance.elmo.RdfOPMFactory

addProperty(Annotation, Property) - Method in class org.openprovenance.model.OPMFactory

addProperty(Annotation, List<Property>) - Method in class org.openprovenance.model.OPMFactory

addProperty(EmbeddedAnnotation, Property) - Method in class org.openprovenance.model.OPMFactory

addProperty(EmbeddedAnnotation, List<Property>) - Method in class org.openprovenance.model.OPMFactory

addTriplesForAnnotation(Resource, EmbeddedAnnotation, List<Triple>) - Method in class org.openprovenance.rdf.OPMXml2Rdf

addUsed(Used) - Method in class org.openprovenance.model.IndexedOPMGraph

Add a used edge to the graph.

addValue(Artifact, Object, String) - Method in class org.openprovenance.model.OPMFactory

addWasControlledBy(WasControlledBy) - Method in class org.openprovenance.model.IndexedOPMGraph

Add a wasControlledBy edge to the graph.

addWasDerivedFrom(WasDerivedFrom) - Method in class org.openprovenance.model.IndexedOPMGraph

Add a wasDerivedFrom edge to the graph.

addWasGeneratedBy(WasGeneratedBy) - Method in class org.openprovenance.model.IndexedOPMGraph

Add a wasGeneratedBy edge to the graph.

addWasTriggeredBy(WasTriggeredBy) - Method in class org.openprovenance.model.IndexedOPMGraph

Add a wasTriggeredBy edge to the graph.

Agent - Class in org.openprovenance.model

Java class for Agent complex type.

Agent() - Constructor for class org.openprovenance.model.Agent

agent - Variable in class org.openprovenance.model.Agents

agent - Variable in class org.openprovenance.model.printer.AgentMap

Agent - Interface in org.openprovenance.rdf

agentColor(Agent) - Method in class org.openprovenance.model.OPMToDot

agentLabel(Agent) - Method in class org.openprovenance.model.OPMToDot

AgentMap - Class in org.openprovenance.model.printer

Java class for AgentMap complex type.

AgentMap() - Constructor for class org.openprovenance.model.printer.AgentMap

AgentMapEntry - Class in org.openprovenance.model.printer

Java class for AgentMapEntry complex type.

AgentMapEntry() - Constructor for class org.openprovenance.model.printer.AgentMapEntry

AgentRef - Class in org.openprovenance.model

Java class for AgentRef complex type.

AgentRef() - Constructor for class org.openprovenance.model.AgentRef

Agents - Class in org.openprovenance.model

Java class for Agents complex type.

Agents() - Constructor for class org.openprovenance.model.Agents

agents - Variable in class org.openprovenance.model.OPMGraph

agents - Variable in class org.openprovenance.model.printer.OPMPrinterConfiguration

Annotable - Interface in org.openprovenance.model

Annotable - Interface in org.openprovenance.rdf

annotation - Variable in class org.openprovenance.model.Account

annotation - Variable in class org.openprovenance.model.Agent

Annotation - Class in org.openprovenance.model

Java class for Annotation complex type.

Annotation() - Constructor for class org.openprovenance.model.Annotation

annotation - Variable in class org.openprovenance.model.Annotations

annotation - Variable in class org.openprovenance.model.Artifact

annotation - Variable in class org.openprovenance.model.EmbeddedAnnotation

annotation - Variable in class org.openprovenance.model.OPMGraph

annotation - Variable in class org.openprovenance.model.Process

annotation - Variable in class org.openprovenance.model.Role

annotation - Variable in class org.openprovenance.model.Used

annotation - Variable in class org.openprovenance.model.UsedStar

annotation - Variable in class org.openprovenance.model.WasControlledBy

annotation - Variable in class org.openprovenance.model.WasDerivedFrom

annotation - Variable in class org.openprovenance.model.WasDerivedFromStar

annotation - Variable in class org.openprovenance.model.WasGeneratedBy

annotation - Variable in class org.openprovenance.model.WasGeneratedByStar

annotation - Variable in class org.openprovenance.model.WasTriggeredBy

annotation - Variable in class org.openprovenance.model.WasTriggeredByStar

Annotation - Interface in org.openprovenance.rdf

annotationColor(EmbeddedAnnotation) - Method in class org.openprovenance.model.OPMToDot

annotationId(String, String) - Method in class org.openprovenance.model.OPMToDot

AnnotationOrEdgeOrNode - Interface in org.openprovenance.rdf

AnnotationRef - Class in org.openprovenance.model

Java class for AnnotationRef complex type.

AnnotationRef() - Constructor for class org.openprovenance.model.AnnotationRef

Annotations - Class in org.openprovenance.model

Java class for Annotations complex type.

Annotations() - Constructor for class org.openprovenance.model.Annotations

annotations - Variable in class org.openprovenance.model.OPMGraph

Artifact - Class in org.openprovenance.model

Java class for Artifact complex type.

Artifact() - Constructor for class org.openprovenance.model.Artifact

artifact - Variable in class org.openprovenance.model.Artifacts

artifact - Variable in class org.openprovenance.model.printer.ArtifactMap

Artifact - Interface in org.openprovenance.rdf

artifactColor(Artifact) - Method in class org.openprovenance.model.OPMToDot

artifactLabel(Artifact) - Method in class org.openprovenance.model.OPMToDot

ArtifactMap - Class in org.openprovenance.model.printer

Java class for ArtifactMap complex type.

ArtifactMap() - Constructor for class org.openprovenance.model.printer.ArtifactMap

ArtifactMapEntry - Class in org.openprovenance.model.printer

Java class for ArtifactMapEntry complex type.

ArtifactMapEntry() - Constructor for class org.openprovenance.model.printer.ArtifactMapEntry

ArtifactRef - Class in org.openprovenance.model

Java class for ArtifactRef complex type.

ArtifactRef() - Constructor for class org.openprovenance.model.ArtifactRef

Artifacts - Class in org.openprovenance.model

Java class for Artifacts complex type.

Artifacts() - Constructor for class org.openprovenance.model.Artifacts

artifacts - Variable in class org.openprovenance.model.OPMGraph

artifacts - Variable in class org.openprovenance.model.printer.OPMPrinterConfiguration

autoGenerateId(String) - Method in class org.openprovenance.elmo.RdfOPMFactory

autoGenerateId(String, String) - Method in class org.openprovenance.elmo.RdfOPMFactory

autoGenerateId(String) - Method in class org.openprovenance.model.OPMFactory

By default, no auto generation of Id.

autoGenerateId(String, String) - Method in class org.openprovenance.model.OPMFactory

Conditional autogeneration of Id.

AValue - Interface in org.openprovenance.rdf

B

builder - Static variable in class org.openprovenance.model.OPMFactory

C

CausalDependencies - Class in org.openprovenance.model

Java class for CausalDependencies complex type.

CausalDependencies() - Constructor for class org.openprovenance.model.CausalDependencies

causalDependencies - Variable in class org.openprovenance.model.OPMGraph

CausalDependencyRef - Class in org.openprovenance.model

Java class for CausalDependencyRef complex type.

CausalDependencyRef() - Constructor for class org.openprovenance.model.CausalDependencyRef

cause - Variable in class org.openprovenance.model.Used

cause - Variable in class org.openprovenance.model.UsedStar

cause - Variable in class org.openprovenance.model.WasControlledBy

cause - Variable in class org.openprovenance.model.WasDerivedFrom

cause - Variable in class org.openprovenance.model.WasDerivedFromStar

cause - Variable in class org.openprovenance.model.WasGeneratedBy

cause - Variable in class org.openprovenance.model.WasGeneratedByStar

cause - Variable in class org.openprovenance.model.WasTriggeredBy

cause - Variable in class org.openprovenance.model.WasTriggeredByStar

CollectionFactory - Class in org.openprovenance.model.collections

An extended Factory of OPM objects related to Collections.

CollectionFactory(OPMFactory) - Constructor for class org.openprovenance.model.collections.CollectionFactory

CollectionURIs - Interface in org.openprovenance.model.collections

color - Variable in class org.openprovenance.model.printer.AccountColorMapEntry

coloredAsAccount - Variable in class org.openprovenance.model.printer.AgentMap

coloredAsAccount - Variable in class org.openprovenance.model.printer.ArtifactMap

coloredAsAccount - Variable in class org.openprovenance.model.printer.ProcessMap

CommonURIs - Interface in org.openprovenance.model

CompactAnnotation - Interface in org.openprovenance.elmo

compactAnnotation(EmbeddedAnnotation) - Method in class org.openprovenance.model.OPMFactory

compactId - Variable in class org.openprovenance.model.OPMFactory

configurePrefixes(Marshaller) - Method in class org.openprovenance.model.OPMSerialiser

CONSTRUCTOR - Static variable in interface org.openprovenance.model.collections.CollectionURIs

CONTAINED - Static variable in interface org.openprovenance.model.collections.CollectionURIs

content - Variable in class org.openprovenance.model.Value

convert(String, String, String) - Method in class org.openprovenance.model.OPMToDot

convert(OPMGraph, String, String) - Method in class org.openprovenance.model.OPMToDot

convert(OPMGraph, File) - Method in class org.openprovenance.model.OPMToDot

convert(OPMGraph, PrintStream) - Method in class org.openprovenance.model.OPMToDot

convert(String) - Method in class org.openprovenance.rdf.OPMRdf2Xml

convert(InputStream) - Method in class org.openprovenance.rdf.OPMRdf2Xml

convert(Set<Triple>) - Method in class org.openprovenance.rdf.OPMRdf2Xml

convert(String, String) - Method in class org.openprovenance.rdf.OPMRdf2Xml

convert(OPMGraph, String) - Method in class org.openprovenance.rdf.OPMXml2Rdf

convert(OPMGraph, OutputStream) - Method in class org.openprovenance.rdf.OPMXml2Rdf

convert(String, String) - Method in class org.openprovenance.rdf.OPMXml2Rdf

convertAccount(String) - Method in class org.openprovenance.model.OPMToDot

convertAgentName(String) - Method in class org.openprovenance.model.OPMToDot

convertAnnotations(Set<Resource>, ProvenanceContextFacade, Context) - Method in class org.openprovenance.rdf.OPMRdf2Xml

convertArtifactName(String) - Method in class org.openprovenance.model.OPMToDot

convertEdgeLabel(String) - Method in class org.openprovenance.model.OPMToDot

convertProcessName(String) - Method in class org.openprovenance.model.OPMToDot

convertProperty(String) - Method in class org.openprovenance.model.OPMToDot

createAccount() - Method in class org.openprovenance.elmo.RdfObjectFactory

createAccount() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of Account

createAccountColorMapEntry() - Method in class org.openprovenance.model.printer.ObjectFactory

Create an instance of AccountColorMapEntry

createAccountMap() - Method in class org.openprovenance.model.printer.ObjectFactory

Create an instance of AccountMap

createAccountRef() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of AccountRef

createAccounts() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of Accounts

createAgent() - Method in class org.openprovenance.elmo.RdfObjectFactory

createAgent() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of Agent

createAgentMap() - Method in class org.openprovenance.model.printer.ObjectFactory

Create an instance of AgentMap

createAgentMapEntry() - Method in class org.openprovenance.model.printer.ObjectFactory

Create an instance of AgentMapEntry

createAgentRef() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of AgentRef

createAgents() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of Agents

createAnnotation() - Method in class org.openprovenance.elmo.RdfObjectFactory

createAnnotation() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of Annotation

createAnnotation(EmbeddedAnnotation) - Method in class org.openprovenance.model.ObjectFactory

Create an instance of JAXBElement<EmbeddedAnnotation>}

createAnnotationRef() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of AnnotationRef

createAnnotations() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of Annotations

createArtifact() - Method in class org.openprovenance.elmo.RdfObjectFactory

createArtifact() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of Artifact

createArtifactMap() - Method in class org.openprovenance.model.printer.ObjectFactory

Create an instance of ArtifactMap

createArtifactMapEntry() - Method in class org.openprovenance.model.printer.ObjectFactory

Create an instance of ArtifactMapEntry

createArtifactRef() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of ArtifactRef

createArtifacts() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of Artifacts

createCausalDependencies() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of CausalDependencies

createCausalDependencyRef() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of CausalDependencyRef

createConfiguration(OPMPrinterConfiguration) - Method in class org.openprovenance.model.printer.ObjectFactory

Create an instance of JAXBElement<OPMPrinterConfiguration>}

createEdgeStyleMap() - Method in class org.openprovenance.model.printer.ObjectFactory

Create an instance of EdgeStyleMap

createEdgeStyleMapEntry() - Method in class org.openprovenance.model.printer.ObjectFactory

Create an instance of EdgeStyleMapEntry

createEmbeddedAnnotation() - Method in class org.openprovenance.elmo.RdfObjectFactory

createEmbeddedAnnotation() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of EmbeddedAnnotation

createLabel() - Method in class org.openprovenance.elmo.RdfObjectFactory

createLabel() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of Label

createLabel(Label) - Method in class org.openprovenance.model.ObjectFactory

Create an instance of JAXBElement<Label>}

createMap() - Method in class org.openprovenance.model.printer.ObjectFactory

Create an instance of Map

createMapEntry() - Method in class org.openprovenance.model.printer.ObjectFactory

Create an instance of MapEntry

createOPMGraph() - Method in class org.openprovenance.elmo.RdfObjectFactory

createOPMGraph() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of OPMGraph

createOpmGraph(OPMGraph) - Method in class org.openprovenance.model.ObjectFactory

Create an instance of JAXBElement<OPMGraph>}

createOPMGraphRef() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of OPMGraphRef

createOPMPrinterConfiguration() - Method in class org.openprovenance.model.printer.ObjectFactory

Create an instance of OPMPrinterConfiguration

createOTime() - Method in class org.openprovenance.elmo.RdfObjectFactory

createOTime() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of OTime

createOverlaps() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of Overlaps

createPName() - Method in class org.openprovenance.elmo.RdfObjectFactory

createPName() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of PName

createPname(PName) - Method in class org.openprovenance.model.ObjectFactory

Create an instance of JAXBElement<PName>}

createProcess() - Method in class org.openprovenance.elmo.RdfObjectFactory

createProcess() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of Process

createProcesses() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of Processes

createProcessMap() - Method in class org.openprovenance.model.printer.ObjectFactory

Create an instance of ProcessMap

createProcessMapEntry() - Method in class org.openprovenance.model.printer.ObjectFactory

Create an instance of ProcessMapEntry

createProcessRef() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of ProcessRef

createProfile() - Method in class org.openprovenance.elmo.RdfObjectFactory

createProfile() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of Profile

createProfile(Profile) - Method in class org.openprovenance.model.ObjectFactory

Create an instance of JAXBElement<Profile>}

createProperty() - Method in class org.openprovenance.elmo.RdfObjectFactory

createProperty() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of Property

createRole() - Method in class org.openprovenance.elmo.RdfObjectFactory

createRole() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of Role

createRoleRef() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of RoleRef

createType() - Method in class org.openprovenance.elmo.RdfObjectFactory

createType() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of Type

createType(Type) - Method in class org.openprovenance.model.ObjectFactory

Create an instance of JAXBElement<Type>}

createType(TypeURI) - Method in class org.openprovenance.profile.collections.ObjectFactory

Create an instance of JAXBElement<TypeURI>}

createUsed() - Method in class org.openprovenance.elmo.RdfObjectFactory

createUsed() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of Used

createUsedStar() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of UsedStar

createValue() - Method in class org.openprovenance.elmo.RdfObjectFactory

createValue() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of Value

createValue(Value) - Method in class org.openprovenance.model.ObjectFactory

Create an instance of JAXBElement<Value>}

createWasControlledBy() - Method in class org.openprovenance.elmo.RdfObjectFactory

createWasControlledBy() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of WasControlledBy

createWasDerivedFrom() - Method in class org.openprovenance.elmo.RdfObjectFactory

createWasDerivedFrom() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of WasDerivedFrom

createWasDerivedFromStar() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of WasDerivedFromStar

createWasGeneratedBy() - Method in class org.openprovenance.elmo.RdfObjectFactory

createWasGeneratedBy() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of WasGeneratedBy

createWasGeneratedByStar() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of WasGeneratedByStar

createWasTriggeredBy() - Method in class org.openprovenance.elmo.RdfObjectFactory

createWasTriggeredBy() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of WasTriggeredBy

createWasTriggeredByStar() - Method in class org.openprovenance.model.ObjectFactory

Create an instance of WasTriggeredByStar

D

dataFactory - Variable in class org.openprovenance.model.OPMFactory

DEFAULT_CONFIGURATION_FILE - Static variable in class org.openprovenance.model.OPMToDot

DEFAULT_CONFIGURATION_FILE_WITH_ROLE - Static variable in class org.openprovenance.model.OPMToDot

defaultAccount - Variable in class org.openprovenance.model.printer.AccountMap

defaultColor - Variable in class org.openprovenance.model.printer.AccountMap

defaultEmptyDocument() - Method in class org.openprovenance.model.OPMSerialiser

By default we use a document provided by the DocumentBuilder factory.

defaultNamespace - Static variable in class org.openprovenance.model.OPMSerialiser

deserialiseOPMGraph(Element) - Method in class org.openprovenance.model.OPMDeserialiser

deserialiseOPMGraph(File) - Method in class org.openprovenance.model.OPMDeserialiser

deserialiseOPMPrinterConfiguration(File) - Method in class org.openprovenance.model.printer.OPMPrinterConfigDeserialiser

deserialiseOPMPrinterConfiguration(InputStream) - Method in class org.openprovenance.model.printer.OPMPrinterConfigDeserialiser

destroy(List) - Method in class org.openprovenance.model.Normalise

deUrify(String) - Method in class org.openprovenance.rdf.OPMRdf2Xml

display - Variable in class org.openprovenance.model.printer.AgentMapEntry

display - Variable in class org.openprovenance.model.printer.ArtifactMapEntry

display - Variable in class org.openprovenance.model.printer.ProcessMapEntry

displayArtifactValue - Variable in class org.openprovenance.model.printer.OPMPrinterConfiguration

displayRole(String) - Method in class org.openprovenance.model.OPMToDot

displayValue - Variable in class org.openprovenance.model.printer.AgentMap

displayValue - Variable in class org.openprovenance.model.printer.ArtifactMap

displayValue - Variable in class org.openprovenance.model.printer.ProcessMap

dumpToRDF(File, SesameManager, RDFFormat, Collection<String[]>) - Method in class org.openprovenance.elmo.RepositoryHelper

E

Edge - Interface in org.openprovenance.model

edge - Variable in class org.openprovenance.model.printer.EdgeStyleMap

Edge - Interface in org.openprovenance.rdf

edges - Variable in class org.openprovenance.model.printer.OPMPrinterConfiguration

EdgeStyleMap - Class in org.openprovenance.model.printer

Java class for EdgeStyleMap complex type.

EdgeStyleMap() - Constructor for class org.openprovenance.model.printer.EdgeStyleMap

EdgeStyleMapEntry - Class in org.openprovenance.model.printer

Java class for EdgeStyleMapEntry complex type.

EdgeStyleMapEntry() - Constructor for class org.openprovenance.model.printer.EdgeStyleMapEntry

effect - Variable in class org.openprovenance.model.Used

effect - Variable in class org.openprovenance.model.UsedStar

effect - Variable in class org.openprovenance.model.WasControlledBy

effect - Variable in class org.openprovenance.model.WasDerivedFrom

effect - Variable in class org.openprovenance.model.WasDerivedFromStar

effect - Variable in class org.openprovenance.model.WasGeneratedBy

effect - Variable in class org.openprovenance.model.WasGeneratedByStar

effect - Variable in class org.openprovenance.model.WasTriggeredBy

effect - Variable in class org.openprovenance.model.WasTriggeredByStar

effectiveMembership(OPMGraph) - Method in class org.openprovenance.model.OPMUtilities

Returns a graph with the same structure, in which the * effective membership of all nodes has been computed.

EmbeddedAnnotation - Class in org.openprovenance.model

Java class for EmbeddedAnnotation complex type.

EmbeddedAnnotation() - Constructor for class org.openprovenance.model.EmbeddedAnnotation

embedExternalAnnotations(OPMGraph) - Method in class org.openprovenance.model.Normalise

emitAgent(Agent, PrintStream) - Method in class org.openprovenance.model.OPMToDot

emitAnnotation(String, EmbeddedAnnotation, PrintStream) - Method in class org.openprovenance.model.OPMToDot

emitArtifact(Artifact, PrintStream) - Method in class org.openprovenance.model.OPMToDot

emitDependency(Edge, PrintStream) - Method in class org.openprovenance.model.OPMToDot

emitEdge(String, String, HashMap<String, String>, PrintStream, boolean) - Method in class org.openprovenance.model.OPMToDot

emitNode(String, HashMap<String, String>, PrintStream) - Method in class org.openprovenance.model.OPMToDot

emitProcess(Process, PrintStream) - Method in class org.openprovenance.model.OPMToDot

emitProperties(StringBuffer, HashMap<String, String>) - Method in class org.openprovenance.model.OPMToDot

encoding - Variable in class org.openprovenance.model.Value

ENCODING_PROPERTY - Static variable in interface org.openprovenance.model.CommonURIs

endTime - Variable in class org.openprovenance.model.WasControlledBy

Entity - Interface in org.openprovenance.rdf

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.Account

equals(Object) - Method in class org.openprovenance.model.Account

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.AccountRef

equals(Object) - Method in class org.openprovenance.model.AccountRef

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.Accounts

equals(Object) - Method in class org.openprovenance.model.Accounts

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.Agent

equals(Object) - Method in class org.openprovenance.model.Agent

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.AgentRef

equals(Object) - Method in class org.openprovenance.model.AgentRef

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.Agents

equals(Object) - Method in class org.openprovenance.model.Agents

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.Annotation

equals(Object) - Method in class org.openprovenance.model.Annotation

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.AnnotationRef

equals(Object) - Method in class org.openprovenance.model.AnnotationRef

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.Annotations

equals(Object) - Method in class org.openprovenance.model.Annotations

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.Artifact

equals(Object) - Method in class org.openprovenance.model.Artifact

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.ArtifactRef

equals(Object) - Method in class org.openprovenance.model.ArtifactRef

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.Artifacts

equals(Object) - Method in class org.openprovenance.model.Artifacts

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.CausalDependencies

equals(Object) - Method in class org.openprovenance.model.CausalDependencies

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.CausalDependencyRef

equals(Object) - Method in class org.openprovenance.model.CausalDependencyRef

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.EmbeddedAnnotation

equals(Object) - Method in class org.openprovenance.model.EmbeddedAnnotation

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.Label

equals(Object) - Method in class org.openprovenance.model.Label

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.OPMGraph

equals(Object) - Method in class org.openprovenance.model.OPMGraph

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.OPMGraphRef

equals(Object) - Method in class org.openprovenance.model.OPMGraphRef

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.OTime

equals(Object) - Method in class org.openprovenance.model.OTime

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.Overlaps

equals(Object) - Method in class org.openprovenance.model.Overlaps

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.PName

equals(Object) - Method in class org.openprovenance.model.PName

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.printer.AccountColorMapEntry

equals(Object) - Method in class org.openprovenance.model.printer.AccountColorMapEntry

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.printer.AccountMap

equals(Object) - Method in class org.openprovenance.model.printer.AccountMap

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.printer.AgentMap

equals(Object) - Method in class org.openprovenance.model.printer.AgentMap

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.printer.AgentMapEntry

equals(Object) - Method in class org.openprovenance.model.printer.AgentMapEntry

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.printer.ArtifactMap

equals(Object) - Method in class org.openprovenance.model.printer.ArtifactMap

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.printer.ArtifactMapEntry

equals(Object) - Method in class org.openprovenance.model.printer.ArtifactMapEntry

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.printer.EdgeStyleMap

equals(Object) - Method in class org.openprovenance.model.printer.EdgeStyleMap

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.printer.EdgeStyleMapEntry

equals(Object) - Method in class org.openprovenance.model.printer.EdgeStyleMapEntry

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.printer.Map

equals(Object) - Method in class org.openprovenance.model.printer.Map

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.printer.MapEntry

equals(Object) - Method in class org.openprovenance.model.printer.MapEntry

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.printer.OPMPrinterConfiguration

equals(Object) - Method in class org.openprovenance.model.printer.OPMPrinterConfiguration

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.printer.ProcessMap

equals(Object) - Method in class org.openprovenance.model.printer.ProcessMap

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.printer.ProcessMapEntry

equals(Object) - Method in class org.openprovenance.model.printer.ProcessMapEntry

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.Process

equals(Object) - Method in class org.openprovenance.model.Process

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.Processes

equals(Object) - Method in class org.openprovenance.model.Processes

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.ProcessRef

equals(Object) - Method in class org.openprovenance.model.ProcessRef

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.Profile

equals(Object) - Method in class org.openprovenance.model.Profile

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.Property

equals(Object) - Method in class org.openprovenance.model.Property

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.Role

equals(Object) - Method in class org.openprovenance.model.Role

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.RoleRef

equals(Object) - Method in class org.openprovenance.model.RoleRef

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.Type

equals(Object) - Method in class org.openprovenance.model.Type

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.Used

equals(Object) - Method in class org.openprovenance.model.Used

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.UsedStar

equals(Object) - Method in class org.openprovenance.model.UsedStar

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.Value

equals(Object) - Method in class org.openprovenance.model.Value

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.WasControlledBy

equals(Object) - Method in class org.openprovenance.model.WasControlledBy

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.WasDerivedFrom

equals(Object) - Method in class org.openprovenance.model.WasDerivedFrom

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.WasDerivedFromStar

equals(Object) - Method in class org.openprovenance.model.WasDerivedFromStar

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.WasGeneratedBy

equals(Object) - Method in class org.openprovenance.model.WasGeneratedBy

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.WasGeneratedByStar

equals(Object) - Method in class org.openprovenance.model.WasGeneratedByStar

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.WasTriggeredBy

equals(Object) - Method in class org.openprovenance.model.WasTriggeredBy

equals(Object, EqualsBuilder) - Method in class org.openprovenance.model.WasTriggeredByStar

equals(Object) - Method in class org.openprovenance.model.WasTriggeredByStar

EventEdge - Interface in org.openprovenance.rdf

exactlyAt - Variable in class org.openprovenance.model.OTime

example(String[]) - Method in class org.openprovenance.rdf.Tutorial

expandAnnotation(EmbeddedAnnotation) - Method in class org.openprovenance.model.OPMFactory

externalSubject - Variable in class org.openprovenance.model.Annotation

F

filterAnnotation(EmbeddedAnnotation) - Method in class org.openprovenance.model.OPMToDot

findMyFacade() - Method in interface org.openprovenance.elmo.HasFacade

findMyFacade() - Method in class org.openprovenance.elmo.RdfAccount

findMyFacade() - Method in class org.openprovenance.elmo.RdfAgent

findMyFacade() - Method in class org.openprovenance.elmo.RdfAnnotation

findMyFacade() - Method in class org.openprovenance.elmo.RdfArtifact

findMyFacade() - Method in class org.openprovenance.elmo.RdfEmbeddedAnnotation

findMyFacade() - Method in class org.openprovenance.elmo.RdfOPMGraph

findMyFacade() - Method in class org.openprovenance.elmo.RdfOTime

findMyFacade() - Method in class org.openprovenance.elmo.RdfProcess

findMyFacade() - Method in class org.openprovenance.elmo.RdfProperty

findMyFacade() - Method in class org.openprovenance.elmo.RdfRole

findMyFacade() - Method in class org.openprovenance.elmo.RdfUsed

findMyFacade() - Method in class org.openprovenance.elmo.RdfValue

findMyFacade() - Method in class org.openprovenance.elmo.RdfWasControlledBy

findMyFacade() - Method in class org.openprovenance.elmo.RdfWasDerivedFrom

findMyFacade() - Method in class org.openprovenance.elmo.RdfWasGeneratedBy

findMyFacade() - Method in class org.openprovenance.elmo.RdfWasTriggeredBy

fromValue(String) - Static method in enum org.openprovenance.profile.collections.TypeURI

G

getAccount() - Method in class org.openprovenance.model.Accounts

Gets the value of the account property.

getAccount() - Method in class org.openprovenance.model.Agent

Gets the value of the account property.

getAccount() - Method in class org.openprovenance.model.Artifact

Gets the value of the account property.

getAccount() - Method in class org.openprovenance.model.EmbeddedAnnotation

Gets the value of the account property.

getAccount() - Method in interface org.openprovenance.model.HasAccounts

getAccount(String) - Method in class org.openprovenance.model.IndexedOPMGraph

getAccount() - Method in class org.openprovenance.model.Overlaps

Gets the value of the account property.

getAccount() - Method in class org.openprovenance.model.printer.AccountMap

Gets the value of the account property.

getAccount() - Method in class org.openprovenance.model.Process

Gets the value of the account property.

getAccount() - Method in class org.openprovenance.model.Used

Gets the value of the account property.

getAccount() - Method in class org.openprovenance.model.UsedStar

Gets the value of the account property.

getAccount() - Method in class org.openprovenance.model.WasControlledBy

Gets the value of the account property.

getAccount() - Method in class org.openprovenance.model.WasDerivedFrom

Gets the value of the account property.

getAccount() - Method in class org.openprovenance.model.WasDerivedFromStar

Gets the value of the account property.

getAccount() - Method in class org.openprovenance.model.WasGeneratedBy

Gets the value of the account property.

getAccount() - Method in class org.openprovenance.model.WasGeneratedByStar

Gets the value of the account property.

getAccount() - Method in class org.openprovenance.model.WasTriggeredBy

Gets the value of the account property.

getAccount() - Method in class org.openprovenance.model.WasTriggeredByStar

Gets the value of the account property.

getAccounts() - Method in class org.openprovenance.elmo.RdfAgent

getAccounts() - Method in class org.openprovenance.elmo.RdfWasDerivedFrom

getAccounts() - Method in class org.openprovenance.elmo.RdfWasTriggeredBy

getAccounts() - Method in class org.openprovenance.model.OPMGraph

Gets the value of the accounts property.

getAccounts() - Method in class org.openprovenance.model.printer.OPMPrinterConfiguration

Gets the value of the accounts property.

getAccounts() - Method in interface org.openprovenance.rdf.AnnotationOrEdgeOrNode

getAgent() - Method in class org.openprovenance.model.Agents

Gets the value of the agent property.

getAgent(String) - Method in class org.openprovenance.model.IndexedOPMGraph

getAgent() - Method in class org.openprovenance.model.printer.AgentMap

Gets the value of the agent property.

getAgents() - Method in class org.openprovenance.model.OPMGraph

Gets the value of the agents property.

getAgents() - Method in class org.openprovenance.model.printer.OPMPrinterConfiguration

Gets the value of the agents property.

getAnnotation() - Method in class org.openprovenance.model.Account

Gets the value of the annotation property.

getAnnotation() - Method in class org.openprovenance.model.Agent

Gets the value of the annotation property.

getAnnotation() - Method in interface org.openprovenance.model.Annotable

getAnnotation() - Method in class org.openprovenance.model.Annotations

Gets the value of the annotation property.

getAnnotation() - Method in class org.openprovenance.model.Artifact

Gets the value of the annotation property.

getAnnotation() - Method in class org.openprovenance.model.EmbeddedAnnotation

Gets the value of the annotation property.

getAnnotation() - Method in class org.openprovenance.model.OPMGraph

Gets the value of the annotation property.

getAnnotation() - Method in class org.openprovenance.model.Process

Gets the value of the annotation property.

getAnnotation() - Method in class org.openprovenance.model.Role

Gets the value of the annotation property.

getAnnotation() - Method in class org.openprovenance.model.Used

Gets the value of the annotation property.

getAnnotation() - Method in class org.openprovenance.model.UsedStar

Gets the value of the annotation property.

getAnnotation() - Method in class org.openprovenance.model.WasControlledBy

Gets the value of the annotation property.

getAnnotation() - Method in class org.openprovenance.model.WasDerivedFrom

Gets the value of the annotation property.

getAnnotation() - Method in class org.openprovenance.model.WasDerivedFromStar

Gets the value of the annotation property.

getAnnotation() - Method in class org.openprovenance.model.WasGeneratedBy

Gets the value of the annotation property.

getAnnotation() - Method in class org.openprovenance.model.WasGeneratedByStar

Gets the value of the annotation property.

getAnnotation() - Method in class org.openprovenance.model.WasTriggeredBy

Gets the value of the annotation property.

getAnnotation() - Method in class org.openprovenance.model.WasTriggeredByStar

Gets the value of the annotation property.

getAnnotations() - Method in class org.openprovenance.elmo.RdfAgent

getAnnotations() - Method in class org.openprovenance.elmo.RdfRole

getAnnotations() - Method in class org.openprovenance.elmo.RdfWasDerivedFrom

getAnnotations() - Method in class org.openprovenance.elmo.RdfWasTriggeredBy

getAnnotations() - Method in class org.openprovenance.model.OPMGraph

Gets the value of the annotations property.

getAnnotations() - Method in interface org.openprovenance.rdf.Annotable

getArtifact() - Method in class org.openprovenance.model.Artifacts

Gets the value of the artifact property.

getArtifact(String) - Method in class org.openprovenance.model.IndexedOPMGraph

getArtifact() - Method in class org.openprovenance.model.printer.ArtifactMap

Gets the value of the artifact property.

getArtifacts() - Method in class org.openprovenance.model.OPMGraph

Gets the value of the artifacts property.

getArtifacts() - Method in class org.openprovenance.model.printer.OPMPrinterConfiguration

Gets the value of the artifacts property.

getAvalues() - Method in interface org.openprovenance.rdf.Artifact

getCausalDependencies() - Method in class org.openprovenance.model.OPMGraph

Gets the value of the causalDependencies property.

getCause() - Method in interface org.openprovenance.model.Edge

getCause() - Method in class org.openprovenance.model.Used

Gets the value of the cause property.

getCause() - Method in class org.openprovenance.model.UsedStar

Gets the value of the cause property.

getCause() - Method in class org.openprovenance.model.WasControlledBy

Gets the value of the cause property.

getCause() - Method in class org.openprovenance.model.WasDerivedFrom

Gets the value of the cause property.

getCause() - Method in class org.openprovenance.model.WasDerivedFromStar

Gets the value of the cause property.

getCause() - Method in class org.openprovenance.model.WasGeneratedBy

Gets the value of the cause property.

getCause() - Method in class org.openprovenance.model.WasGeneratedByStar

Gets the value of the cause property.

getCause() - Method in class org.openprovenance.model.WasTriggeredBy

Gets the value of the cause property.

getCause() - Method in class org.openprovenance.model.WasTriggeredByStar

Gets the value of the cause property.

getCause() - Method in interface org.openprovenance.rdf.Edge

the cause of an Edge

getColor() - Method in class org.openprovenance.model.printer.AccountColorMapEntry

Gets the value of the color property.

getContent() - Method in class org.openprovenance.model.Value

Gets the value of the content property.

getContent() - Method in interface org.openprovenance.rdf.AValue

getDefault() - Method in class org.openprovenance.model.printer.EdgeStyleMap

Gets the value of the default property.

getDefaultAccount() - Method in class org.openprovenance.model.printer.AccountMap

Gets the value of the defaultAccount property.

getDefaultColor() - Method in class org.openprovenance.model.printer.AccountMap

Gets the value of the defaultColor property.

getDeserialiser() - Method in class org.openprovenance.model.OPMToDot

getDisplay() - Method in class org.openprovenance.model.printer.AgentMapEntry

Gets the value of the display property.

getDisplay() - Method in class org.openprovenance.model.printer.ArtifactMapEntry

Gets the value of the display property.

getDisplay() - Method in class org.openprovenance.model.printer.ProcessMapEntry

Gets the value of the display property.

getDocument() - Method in class org.openprovenance.elmo.XMLLiteral

getEdge() - Method in class org.openprovenance.model.printer.EdgeStyleMap

Gets the value of the edge property.

getEdgePrintRole(Edge) - Method in class org.openprovenance.model.OPMToDot

getEdgeRole() - Method in class org.openprovenance.elmo.RdfWasTriggeredBy

getEdges(OPMGraph) - Method in class org.openprovenance.model.OPMUtilities

getEdges() - Method in class org.openprovenance.model.printer.OPMPrinterConfiguration

Gets the value of the edges property.

getEdgeStyle(Edge) - Method in class org.openprovenance.model.OPMToDot

getEffect() - Method in interface org.openprovenance.model.Edge

getEffect() - Method in class org.openprovenance.model.Used

Gets the value of the effect property.

getEffect() - Method in class org.openprovenance.model.UsedStar

Gets the value of the effect property.

getEffect() - Method in class org.openprovenance.model.WasControlledBy

Gets the value of the effect property.

getEffect() - Method in class org.openprovenance.model.WasDerivedFrom

Gets the value of the effect property.

getEffect() - Method in class org.openprovenance.model.WasDerivedFromStar

Gets the value of the effect property.

getEffect() - Method in class org.openprovenance.model.WasGeneratedBy

Gets the value of the effect property.

getEffect() - Method in class org.openprovenance.model.WasGeneratedByStar

Gets the value of the effect property.

getEffect() - Method in class org.openprovenance.model.WasTriggeredBy

Gets the value of the effect property.

getEffect() - Method in class org.openprovenance.model.WasTriggeredByStar

Gets the value of the effect property.

getEffect() - Method in interface org.openprovenance.rdf.Edge

the effect of an Edge

getEncoding(EmbeddedAnnotation) - Method in class org.openprovenance.model.OPMFactory

getEncoding() - Method in class org.openprovenance.model.Value

Gets the value of the encoding property.

getEncoding() - Method in interface org.openprovenance.rdf.AValue

getEndTime() - Method in class org.openprovenance.model.WasControlledBy

Gets the value of the endTime property.

getEndTime() - Method in interface org.openprovenance.rdf.WasControlledBy

the time at which the agent end controlling the process

getExactlyAt() - Method in class org.openprovenance.model.OTime

Gets the value of the exactlyAt property.

getExactlyAt() - Method in interface org.openprovenance.rdf.OTime

The event occurred exactly at this time.

getExternalSubject() - Method in class org.openprovenance.model.Annotation

Gets the value of the externalSubject property.

getFactory() - Static method in class org.openprovenance.model.OPMFactory

getFromRegisters(String) - Method in class org.openprovenance.elmo.RdfOPMFactory

getGeneratedRole() - Method in class org.openprovenance.elmo.RdfWasTriggeredBy

getGraphName() - Method in class org.openprovenance.model.printer.OPMPrinterConfiguration

Gets the value of the graphName property.

getHasAccount() - Method in interface org.openprovenance.rdf.OPMGraph

getHasAgent() - Method in interface org.openprovenance.rdf.OPMGraph

getHasArtifact() - Method in interface org.openprovenance.rdf.OPMGraph

getHasDependency() - Method in interface org.openprovenance.rdf.OPMGraph

getHasProcess() - Method in interface org.openprovenance.rdf.OPMGraph

getId() - Method in class org.openprovenance.model.Account

Gets the value of the id property.

getId() - Method in class org.openprovenance.model.Agent

Gets the value of the id property.

getId() - Method in class org.openprovenance.model.Artifact

Gets the value of the id property.

getId() - Method in class org.openprovenance.model.EmbeddedAnnotation

Gets the value of the id property.

getId() - Method in interface org.openprovenance.model.Identifiable

getId() - Method in class org.openprovenance.model.OPMGraph

Gets the value of the id property.

getId() - Method in class org.openprovenance.model.Process

Gets the value of the id property.

getId() - Method in class org.openprovenance.model.Role

Gets the value of the id property.

getId() - Method in class org.openprovenance.model.Used

Gets the value of the id property.

getId() - Method in class org.openprovenance.model.UsedStar

Gets the value of the id property.

getId() - Method in class org.openprovenance.model.WasControlledBy

Gets the value of the id property.

getId() - Method in class org.openprovenance.model.WasDerivedFrom

Gets the value of the id property.

getId() - Method in class org.openprovenance.model.WasDerivedFromStar

Gets the value of the id property.

getId() - Method in class org.openprovenance.model.WasGeneratedBy

Gets the value of the id property.

getId() - Method in class org.openprovenance.model.WasGeneratedByStar

Gets the value of the id property.

getId() - Method in class org.openprovenance.model.WasTriggeredBy

Gets the value of the id property.

getId() - Method in class org.openprovenance.model.WasTriggeredByStar

Gets the value of the id property.

getLabel(EmbeddedAnnotation) - Method in class org.openprovenance.model.OPMFactory

getLabel(List<JAXBElement<? extends EmbeddedAnnotation>>) - Method in class org.openprovenance.model.OPMFactory

Return the value of the label property in the first annotation.

getLabel(Annotable) - Method in class org.openprovenance.model.OPMFactory

Generic accessor for annotable entities.

getLabels(List<JAXBElement<? extends EmbeddedAnnotation>>) - Method in class org.openprovenance.model.OPMFactory

Return the value of the label property.

getLabels() - Method in interface org.openprovenance.rdf.Annotable

getLocalSubject() - Method in class org.openprovenance.model.Annotation

Gets the value of the localSubject property.

getMap() - Method in class org.openprovenance.model.printer.Map

Gets the value of the map property.

getName() - Method in class org.openprovenance.model.printer.AccountColorMapEntry

Gets the value of the name property.

getName() - Method in class org.openprovenance.model.printer.MapEntry

Gets the value of the name property.

getNodes(OPMGraph) - Method in class org.openprovenance.model.OPMUtilities

getNoEarlierThan() - Method in class org.openprovenance.model.OTime

Gets the value of the noEarlierThan property.

getNoEarlierThan() - Method in interface org.openprovenance.rdf.OTime

the event occurred no earlier than this time

getNoLaterThan() - Method in class org.openprovenance.model.OTime

Gets the value of the noLaterThan property.

getNoLaterThan() - Method in interface org.openprovenance.rdf.OTime

the event occurred no later than this time

getObjectFactory() - Method in class org.openprovenance.model.OPMFactory

getOverlaps() - Method in class org.openprovenance.model.Accounts

Gets the value of the overlaps property.

getPackageList() - Method in class org.openprovenance.model.OPMFactory

getPname(EmbeddedAnnotation) - Method in class org.openprovenance.model.OPMFactory

getPname(List<JAXBElement<? extends EmbeddedAnnotation>>) - Method in class org.openprovenance.model.OPMFactory

Return the value of the pname property in the first annotation.

getPname(Annotable) - Method in class org.openprovenance.model.OPMFactory

Generic accessor for annotable entities.

getPnames(List<JAXBElement<? extends EmbeddedAnnotation>>) - Method in class org.openprovenance.model.OPMFactory

Return the value of the pname property.

getPnames() - Method in interface org.openprovenance.rdf.Annotable

getPreDeclaredNamespaceUris() - Method in class org.openprovenance.model.NamespacePrefixMapper

Returns a list of namespace URIs that should be declared at the root element.

getPreferredPrefix(String, String, boolean) - Method in class org.openprovenance.model.NamespacePrefixMapper

Returns a preferred prefix for the given namespace URI.

getProcess(String) - Method in class org.openprovenance.model.IndexedOPMGraph

getProcess() - Method in class org.openprovenance.model.printer.ProcessMap

Gets the value of the process property.

getProcess() - Method in class org.openprovenance.model.Processes

Gets the value of the process property.

getProcesses() - Method in class org.openprovenance.model.OPMGraph

Gets the value of the processes property.

getProcesses() - Method in class org.openprovenance.model.printer.OPMPrinterConfiguration

Gets the value of the processes property.

getProfile(EmbeddedAnnotation) - Method in class org.openprovenance.model.OPMFactory

getProfile(List<JAXBElement<? extends EmbeddedAnnotation>>) - Method in class org.openprovenance.model.OPMFactory

Return the value of the profile property in the first annotation.

getProfile(Annotable) - Method in class org.openprovenance.model.OPMFactory

Generic accessor for annotable entities.

getProfiles(List<JAXBElement<? extends EmbeddedAnnotation>>) - Method in class org.openprovenance.model.OPMFactory

Return the value of the profile property.

getProfiles() - Method in interface org.openprovenance.rdf.Annotable

getProperties() - Method in interface org.openprovenance.rdf.Annotation

getProperty() - Method in class org.openprovenance.model.EmbeddedAnnotation

Gets the value of the property property.

getQName() - Method in interface org.openprovenance.elmo.HasFacade

getQName() - Method in class org.openprovenance.elmo.RdfAccount

getQName() - Method in class org.openprovenance.elmo.RdfAgent

getQName() - Method in class org.openprovenance.elmo.RdfAnnotation

getQName() - Method in class org.openprovenance.elmo.RdfArtifact

getQName() - Method in class org.openprovenance.elmo.RdfEmbeddedAnnotation

getQName() - Method in class org.openprovenance.elmo.RdfOPMGraph

getQName() - Method in class org.openprovenance.elmo.RdfOTime

getQName() - Method in class org.openprovenance.elmo.RdfProcess

getQName() - Method in class org.openprovenance.elmo.RdfProperty

getQName() - Method in class org.openprovenance.elmo.RdfRole

getQName() - Method in class org.openprovenance.elmo.RdfUsed

getQName() - Method in class org.openprovenance.elmo.RdfValue

getQName() - Method in class org.openprovenance.elmo.RdfWasControlledBy

getQName() - Method in class org.openprovenance.elmo.RdfWasDerivedFrom

getQName() - Method in class org.openprovenance.elmo.RdfWasGeneratedBy

getQName() - Method in class org.openprovenance.elmo.RdfWasTriggeredBy

getRef() - Method in class org.openprovenance.model.AccountRef

Gets the value of the ref property.

getRef() - Method in class org.openprovenance.model.AgentRef

Gets the value of the ref property.

getRef() - Method in class org.openprovenance.model.AnnotationRef

Gets the value of the ref property.

getRef() - Method in class org.openprovenance.model.ArtifactRef

Gets the value of the ref property.

getRef() - Method in class org.openprovenance.model.CausalDependencyRef

Gets the value of the ref property.

getRef() - Method in class org.openprovenance.model.OPMGraphRef

Gets the value of the ref property.

getRef() - Method in class org.openprovenance.model.ProcessRef

Gets the value of the ref property.

getRef() - Method in interface org.openprovenance.model.Ref

getRef() - Method in class org.openprovenance.model.RoleRef

Gets the value of the ref property.

getRole(Edge) - Method in class org.openprovenance.model.OPMFactory

getRole() - Method in class org.openprovenance.model.Used

Gets the value of the role property.

getRole() - Method in class org.openprovenance.model.WasControlledBy

Gets the value of the role property.

getRole() - Method in class org.openprovenance.model.WasGeneratedBy

Gets the value of the role property.

getRole() - Method in interface org.openprovenance.rdf.UsedOrWasControlledByOrWasGeneratedBy

getStartTime() - Method in class org.openprovenance.model.WasControlledBy

Gets the value of the startTime property.

getStartTime() - Method in interface org.openprovenance.rdf.WasControlledBy

the time at which the agent began controlling the process

getStyle() - Method in class org.openprovenance.model.printer.EdgeStyleMapEntry

Gets the value of the style property.

getThreadOPMDeserialiser() - Static method in class org.openprovenance.model.OPMDeserialiser

getThreadOPMPrinterConfigDeserialiser() - Static method in class org.openprovenance.model.printer.OPMPrinterConfigDeserialiser

getThreadOPMSerialiser() - Static method in class org.openprovenance.model.OPMSerialiser

getTime() - Method in class org.openprovenance.model.Used

Gets the value of the time property.

getTime() - Method in class org.openprovenance.model.WasDerivedFrom

Gets the value of the time property.

getTime() - Method in class org.openprovenance.model.WasGeneratedBy

Gets the value of the time property.

getTime() - Method in class org.openprovenance.model.WasTriggeredBy

Gets the value of the time property.

getTime() - Method in interface org.openprovenance.rdf.EventEdge

a piece of timing information associated with an event

getType(EmbeddedAnnotation) - Method in class org.openprovenance.model.OPMFactory

getType(List<JAXBElement<? extends EmbeddedAnnotation>>) - Method in class org.openprovenance.model.OPMFactory

Return the value of the type property in the first annotation.

getType(Annotable) - Method in class org.openprovenance.model.OPMFactory

Generic accessor for annotable entities.

getType() - Method in class org.openprovenance.model.printer.EdgeStyleMapEntry

Gets the value of the type property.

getTypes(List<JAXBElement<? extends EmbeddedAnnotation>>) - Method in class org.openprovenance.model.OPMFactory

Return the value of the type property.

getTypes() - Method in interface org.openprovenance.rdf.Annotable

getUri() - Method in class org.openprovenance.model.Property

Gets the value of the uri property.

getUri() - Method in interface org.openprovenance.rdf.Property

getUsed() - Method in class org.openprovenance.model.IndexedOPMGraph

Return all used edges for this graph.

getUsed(Process) - Method in class org.openprovenance.model.IndexedOPMGraph

Return all used edges with process p as an effect.

getUsed(Artifact) - Method in class org.openprovenance.model.IndexedOPMGraph

Return all used edges with artifact a as a cause.

getUsedOrWasGeneratedByOrWasTriggeredBy() - Method in class org.openprovenance.model.CausalDependencies

Gets the value of the usedOrWasGeneratedByOrWasTriggeredBy property.

getValue() - Method in class org.openprovenance.model.Label

Gets the value of the value property.

getValue(EmbeddedAnnotation) - Method in class org.openprovenance.model.OPMFactory

getValue(List<JAXBElement<? extends EmbeddedAnnotation>>) - Method in class org.openprovenance.model.OPMFactory

Return the value of the value property in the first annotation.

getValue() - Method in class org.openprovenance.model.PName

Gets the value of the value property.

getValue() - Method in class org.openprovenance.model.printer.AgentMapEntry

Gets the value of the value property.

getValue() - Method in class org.openprovenance.model.printer.ArtifactMapEntry

Gets the value of the value property.

getValue() - Method in class org.openprovenance.model.printer.MapEntry

Gets the value of the value property.

getValue() - Method in class org.openprovenance.model.printer.ProcessMapEntry

Gets the value of the value property.

getValue() - Method in class org.openprovenance.model.Profile

Gets the value of the value property.

getValue() - Method in class org.openprovenance.model.Property

Gets the value of the value property.

getValue() - Method in class org.openprovenance.model.Role

Gets the value of the value property.

getValue() - Method in class org.openprovenance.model.Type

Gets the value of the value property.

getValue() - Method in interface org.openprovenance.rdf.PropertyOrRole

the value of a role or a property

getValues(List<JAXBElement<? extends EmbeddedAnnotation>>) - Method in class org.openprovenance.model.OPMFactory

Return the value of the value property.

getWasControlledBy() - Method in class org.openprovenance.model.IndexedOPMGraph

Return all WasControlledBy edges for this graph.

getWasControlledBy(Process) - Method in class org.openprovenance.model.IndexedOPMGraph

Return all WasControlledBy edges with process p as an effect.

getWasControlledBy(Agent) - Method in class org.openprovenance.model.IndexedOPMGraph

Return all WasControlledBy edges with artifact a as a cause.

getWasDerivedFrom() - Method in class org.openprovenance.model.IndexedOPMGraph

Return all WasDerivedFrom edges for this graph.

getWasDerivedFromWithCause(Artifact) - Method in class org.openprovenance.model.IndexedOPMGraph

Return all WasDerivedFrom edges with artifact a as a cause.

getWasDerivedFromWithEffect(Artifact) - Method in class org.openprovenance.model.IndexedOPMGraph

Return all WasDerivedFrom edges with artifact a as an effect .

getWasGeneratedBy() - Method in class org.openprovenance.model.IndexedOPMGraph

Return all WasGeneratedBy edges for this graph.

getWasGeneratedBy(Process) - Method in class org.openprovenance.model.IndexedOPMGraph

Return all WasGeneratedBy edges with process p as an effect.

getWasGeneratedBy(Artifact) - Method in class org.openprovenance.model.IndexedOPMGraph

Return all WasGeneratedBy edges with artifact a as a cause.

getWasTriggeredBy() - Method in class org.openprovenance.model.IndexedOPMGraph

Return all WasTriggeredBy edges for this graph.

getWasTriggeredByWithCause(Process) - Method in class org.openprovenance.model.IndexedOPMGraph

Return all WasTriggeredBy edges with process p as a cause.

getWasTriggeredByWithEffect(Process) - Method in class org.openprovenance.model.IndexedOPMGraph

Return all WasTriggeredBy edges with process a as an effect.

graphName - Variable in class org.openprovenance.model.printer.OPMPrinterConfiguration

H

HasAccounts - Interface in org.openprovenance.model

HasFacade<TYPE> - Interface in org.openprovenance.elmo

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.Account

hashCode() - Method in class org.openprovenance.model.Account

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.AccountRef

hashCode() - Method in class org.openprovenance.model.AccountRef

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.Accounts

hashCode() - Method in class org.openprovenance.model.Accounts

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.Agent

hashCode() - Method in class org.openprovenance.model.Agent

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.AgentRef

hashCode() - Method in class org.openprovenance.model.AgentRef

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.Agents

hashCode() - Method in class org.openprovenance.model.Agents

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.Annotation

hashCode() - Method in class org.openprovenance.model.Annotation

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.AnnotationRef

hashCode() - Method in class org.openprovenance.model.AnnotationRef

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.Annotations

hashCode() - Method in class org.openprovenance.model.Annotations

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.Artifact

hashCode() - Method in class org.openprovenance.model.Artifact

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.ArtifactRef

hashCode() - Method in class org.openprovenance.model.ArtifactRef

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.Artifacts

hashCode() - Method in class org.openprovenance.model.Artifacts

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.CausalDependencies

hashCode() - Method in class org.openprovenance.model.CausalDependencies

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.CausalDependencyRef

hashCode() - Method in class org.openprovenance.model.CausalDependencyRef

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.EmbeddedAnnotation

hashCode() - Method in class org.openprovenance.model.EmbeddedAnnotation

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.Label

hashCode() - Method in class org.openprovenance.model.Label

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.OPMGraph

hashCode() - Method in class org.openprovenance.model.OPMGraph

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.OPMGraphRef

hashCode() - Method in class org.openprovenance.model.OPMGraphRef

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.OTime

hashCode() - Method in class org.openprovenance.model.OTime

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.Overlaps

hashCode() - Method in class org.openprovenance.model.Overlaps

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.PName

hashCode() - Method in class org.openprovenance.model.PName

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.printer.AccountColorMapEntry

hashCode() - Method in class org.openprovenance.model.printer.AccountColorMapEntry

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.printer.AccountMap

hashCode() - Method in class org.openprovenance.model.printer.AccountMap

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.printer.AgentMap

hashCode() - Method in class org.openprovenance.model.printer.AgentMap

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.printer.AgentMapEntry

hashCode() - Method in class org.openprovenance.model.printer.AgentMapEntry

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.printer.ArtifactMap

hashCode() - Method in class org.openprovenance.model.printer.ArtifactMap

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.printer.ArtifactMapEntry

hashCode() - Method in class org.openprovenance.model.printer.ArtifactMapEntry

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.printer.EdgeStyleMap

hashCode() - Method in class org.openprovenance.model.printer.EdgeStyleMap

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.printer.EdgeStyleMapEntry

hashCode() - Method in class org.openprovenance.model.printer.EdgeStyleMapEntry

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.printer.Map

hashCode() - Method in class org.openprovenance.model.printer.Map

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.printer.MapEntry

hashCode() - Method in class org.openprovenance.model.printer.MapEntry

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.printer.OPMPrinterConfiguration

hashCode() - Method in class org.openprovenance.model.printer.OPMPrinterConfiguration

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.printer.ProcessMap

hashCode() - Method in class org.openprovenance.model.printer.ProcessMap

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.printer.ProcessMapEntry

hashCode() - Method in class org.openprovenance.model.printer.ProcessMapEntry

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.Process

hashCode() - Method in class org.openprovenance.model.Process

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.Processes

hashCode() - Method in class org.openprovenance.model.Processes

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.ProcessRef

hashCode() - Method in class org.openprovenance.model.ProcessRef

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.Profile

hashCode() - Method in class org.openprovenance.model.Profile

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.Property

hashCode() - Method in class org.openprovenance.model.Property

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.Role

hashCode() - Method in class org.openprovenance.model.Role

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.RoleRef

hashCode() - Method in class org.openprovenance.model.RoleRef

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.Type

hashCode() - Method in class org.openprovenance.model.Type

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.Used

hashCode() - Method in class org.openprovenance.model.Used

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.UsedStar

hashCode() - Method in class org.openprovenance.model.UsedStar

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.Value

hashCode() - Method in class org.openprovenance.model.Value

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.WasControlledBy

hashCode() - Method in class org.openprovenance.model.WasControlledBy

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.WasDerivedFrom

hashCode() - Method in class org.openprovenance.model.WasDerivedFrom

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.WasDerivedFromStar

hashCode() - Method in class org.openprovenance.model.WasDerivedFromStar

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.WasGeneratedBy

hashCode() - Method in class org.openprovenance.model.WasGeneratedBy

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.WasGeneratedByStar

hashCode() - Method in class org.openprovenance.model.WasGeneratedByStar

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.WasTriggeredBy

hashCode() - Method in class org.openprovenance.model.WasTriggeredBy

hashCode(HashCodeBuilder) - Method in class org.openprovenance.model.WasTriggeredByStar

hashCode() - Method in class org.openprovenance.model.WasTriggeredByStar

I

id - Variable in class org.openprovenance.model.Account

id - Variable in class org.openprovenance.model.Agent

id - Variable in class org.openprovenance.model.Artifact

id - Variable in class org.openprovenance.model.EmbeddedAnnotation

id - Variable in class org.openprovenance.model.OPMGraph

id - Variable in class org.openprovenance.model.Process

id - Variable in class org.openprovenance.model.Role

id - Variable in class org.openprovenance.model.Used

id - Variable in class org.openprovenance.model.UsedStar

id - Variable in class org.openprovenance.model.WasControlledBy

id - Variable in class org.openprovenance.model.WasDerivedFrom

id - Variable in class org.openprovenance.model.WasDerivedFromStar

id - Variable in class org.openprovenance.model.WasGeneratedBy

id - Variable in class org.openprovenance.model.WasGeneratedByStar

id - Variable in class org.openprovenance.model.WasTriggeredBy

id - Variable in class org.openprovenance.model.WasTriggeredByStar

Identifiable - Interface in org.openprovenance.model

IndexedOPMGraph - Class in org.openprovenance.model

This class provides a set of indexes over information contained in an OPMGraph, facilitating its navigation.

IndexedOPMGraph(OPMFactory, OPMGraph) - Constructor for class org.openprovenance.model.IndexedOPMGraph

init(String) - Method in class org.openprovenance.model.OPMToDot

init(InputStream) - Method in class org.openprovenance.model.OPMToDot

init(OPMPrinterConfiguration) - Method in class org.openprovenance.model.OPMToDot

intersection(OPMGraph, OPMGraph) - Method in class org.openprovenance.model.OPMUtilities

isColoredAsAccount() - Method in class org.openprovenance.model.printer.AgentMap

Gets the value of the coloredAsAccount property.

isColoredAsAccount() - Method in class org.openprovenance.model.printer.ArtifactMap

Gets the value of the coloredAsAccount property.

isColoredAsAccount() - Method in class org.openprovenance.model.printer.ProcessMap

Gets the value of the coloredAsAccount property.

isDisplayArtifactValue() - Method in class org.openprovenance.model.printer.OPMPrinterConfiguration

Gets the value of the displayArtifactValue property.

isDisplayValue() - Method in class org.openprovenance.model.printer.AgentMap

Gets the value of the displayValue property.

isDisplayValue() - Method in class org.openprovenance.model.printer.ArtifactMap

Gets the value of the displayValue property.

isDisplayValue() - Method in class org.openprovenance.model.printer.ProcessMap

Gets the value of the displayValue property.

isPrintRole() - Method in class org.openprovenance.model.printer.EdgeStyleMapEntry

Gets the value of the printRole property.

J

jc - Static variable in class org.openprovenance.model.OPMDeserialiser

jc - Variable in class org.openprovenance.model.OPMSerialiser

jc - Static variable in class org.openprovenance.model.printer.OPMPrinterConfigDeserialiser

L

Label - Class in org.openprovenance.model

Java class for Label complex type.

Label() - Constructor for class org.openprovenance.model.Label

LABEL_PROPERTY - Static variable in interface org.openprovenance.model.CommonURIs

legalAccount(OPMGraph) - Method in class org.openprovenance.model.OPMUtilities

localSubject - Variable in class org.openprovenance.model.Annotation

M

main(String[]) - Static method in class org.openprovenance.elmo.RepositoryHelper

main(String[]) - Static method in class org.openprovenance.model.OPMDeserialiser

main(String[]) - Static method in class org.openprovenance.model.OPMToDot

main(String[]) - Static method in class org.openprovenance.rdf.OPMRdf2Xml

main(String[]) - Static method in class org.openprovenance.rdf.OPMXml2Rdf

makeLiteral(Object) - Method in class org.openprovenance.rdf.OPMXml2Rdf

Map - Class in org.openprovenance.model.printer

Java class for Map complex type.

Map() - Constructor for class org.openprovenance.model.printer.Map

map - Variable in class org.openprovenance.model.printer.Map

MapEntry - Class in org.openprovenance.model.printer

Java class for MapEntry complex type.

MapEntry() - Constructor for class org.openprovenance.model.printer.MapEntry

N

name - Variable in class org.openprovenance.model.printer.AccountColorMapEntry

name - Variable in class org.openprovenance.model.printer.MapEntry

NamespacePrefixMapper - Class in org.openprovenance.model

Prefix definition for OPM serialisations.

NamespacePrefixMapper(String) - Constructor for class org.openprovenance.model.NamespacePrefixMapper

NEW_ENCODING_PROPERTY - Static variable in interface org.openprovenance.model.CommonURIs

NEW_LABEL_PROPERTY - Static variable in interface org.openprovenance.model.CommonURIs

NEW_PNAME_PROPERTY - Static variable in interface org.openprovenance.model.CommonURIs

NEW_PROFILE_PROPERTY - Static variable in interface org.openprovenance.model.CommonURIs

NEW_TYPE_PROPERTY - Static variable in interface org.openprovenance.model.CommonURIs

NEW_VALUE_PROPERTY - Static variable in interface org.openprovenance.model.CommonURIs

newAccount(QName) - Method in class org.openprovenance.elmo.RdfOPMFactory

newAccount(Account) - Method in class org.openprovenance.elmo.RdfOPMFactory

newAccount(String) - Method in class org.openprovenance.model.OPMFactory

newAccount(String, String) - Method in class org.openprovenance.model.OPMFactory

newAccount(Account) - Method in class org.openprovenance.model.OPMFactory

newAccountRef(Account) - Method in class org.openprovenance.model.OPMFactory

newAccounts(List<AccountRef>) - Method in class org.openprovenance.elmo.RdfOPMFactory

newAccounts(Collection<Account>, Collection<Overlaps>) - Method in class org.openprovenance.model.OPMFactory

newAgent(Agent) - Method in class org.openprovenance.elmo.RdfOPMFactory

newAgent(QName) - Method in class org.openprovenance.elmo.RdfOPMFactory

newAgent(String, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newAgent(String, Collection<Account>, String) - Method in class org.openprovenance.model.OPMFactory

newAgent(Agent) - Method in class org.openprovenance.model.OPMFactory

newAgentRef(Agent) - Method in class org.openprovenance.model.OPMFactory

newAnnotation(Annotation) - Method in class org.openprovenance.elmo.RdfOPMFactory

newAnnotation(Annotation) - Method in class org.openprovenance.elmo.RdfOPMFactory

newAnnotation(String, Artifact, String, Object, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newAnnotation(String, Process, String, Object, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newAnnotation(String, Annotation, String, Object, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newAnnotation(String, WasDerivedFrom, String, Object, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newAnnotation(String, Used, String, Object, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newAnnotation(String, WasGeneratedBy, String, Object, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newAnnotation(String, WasControlledBy, String, Object, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newAnnotation(String, WasTriggeredBy, String, Object, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newAnnotation(String, Role, String, Object, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newAnnotation(String, Ref, String, Object, Collection<AccountRef>) - Method in class org.openprovenance.model.OPMFactory

newAnnotation(String, Object, List<Property>, Collection<AccountRef>) - Method in class org.openprovenance.model.OPMFactory

newAnnotation(Annotation) - Method in class org.openprovenance.model.OPMFactory

newAnnotationRef(Annotation) - Method in class org.openprovenance.model.OPMFactory

newArtifact(Artifact) - Method in class org.openprovenance.elmo.RdfOPMFactory

newArtifact(QName) - Method in class org.openprovenance.elmo.RdfOPMFactory

newArtifact(Artifact) - Method in class org.openprovenance.model.OPMFactory

newArtifact(String, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newArtifact(String, Collection<Account>, String) - Method in class org.openprovenance.model.OPMFactory

newArtifactRef(Artifact) - Method in class org.openprovenance.model.OPMFactory

newCausalDependencyRef(WasGeneratedBy) - Method in class org.openprovenance.model.OPMFactory

newCausalDependencyRef(Used) - Method in class org.openprovenance.model.OPMFactory

newCausalDependencyRef(WasDerivedFrom) - Method in class org.openprovenance.model.OPMFactory

newCausalDependencyRef(WasControlledBy) - Method in class org.openprovenance.model.OPMFactory

newCausalDependencyRef(WasTriggeredBy) - Method in class org.openprovenance.model.OPMFactory

newContained(String, Artifact, Artifact, Collection<Account>) - Method in class org.openprovenance.model.collections.CollectionFactory

newEmbeddedAnnotation(Annotation) - Method in class org.openprovenance.elmo.RdfOPMFactory

newEmbeddedAnnotation(String, String, Object, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newEmbeddedAnnotation(String, String, Object, Collection<AccountRef>, Object) - Method in class org.openprovenance.model.OPMFactory

newEmbeddedAnnotation(String, List<Property>, Collection<AccountRef>, Object) - Method in class org.openprovenance.model.OPMFactory

newInstantaneousTime(XMLGregorianCalendar) - Method in class org.openprovenance.model.OPMFactory

newInstantaneousTime(String) - Method in class org.openprovenance.model.OPMFactory

newInstantaneousTime(Date) - Method in class org.openprovenance.model.OPMFactory

newInstantaneousTimeNow() - Method in class org.openprovenance.model.OPMFactory

newLabel(String) - Method in class org.openprovenance.model.OPMFactory

newOPMGraph(String, Collection<Account>, Collection<Overlaps>, Collection<Process>, Collection<Artifact>, Collection<Agent>, Collection<Object>, Collection<Annotation>) - Method in class org.openprovenance.elmo.RdfOPMFactory

newOPMGraph(OPMGraph) - Method in class org.openprovenance.elmo.RdfOPMFactory

newOPMGraph(OPMGraph) - Method in class org.openprovenance.elmo.RdfOPMFactory

Clones an OPMGraph to an OPMGraph with facade, and creates corresponding rdf representation in triple store.

newOPMGraph(Collection<Account>, Collection<Overlaps>, Collection<Process>, Collection<Artifact>, Collection<Agent>, Collection<Object>) - Method in class org.openprovenance.model.OPMFactory

newOPMGraph(Collection<Account>, Collection<Overlaps>, Collection<Process>, Collection<Artifact>, Collection<Agent>, Collection<Object>, Collection<Annotation>) - Method in class org.openprovenance.model.OPMFactory

newOPMGraph(String, Collection<Account>, Collection<Overlaps>, Collection<Process>, Collection<Artifact>, Collection<Agent>, Collection<Object>, Collection<Annotation>) - Method in class org.openprovenance.model.OPMFactory

newOPMGraph(Collection<Account>, Overlaps[], Process[], Artifact[], Agent[], Object[]) - Method in class org.openprovenance.model.OPMFactory

newOPMGraph(Collection<Account>, Overlaps[], Process[], Artifact[], Agent[], Object[], Annotation[]) - Method in class org.openprovenance.model.OPMFactory

newOPMGraph(String, Collection<Account>, Overlaps[], Process[], Artifact[], Agent[], Object[], Annotation[]) - Method in class org.openprovenance.model.OPMFactory

newOPMGraph(Accounts, Processes, Artifacts, Agents, CausalDependencies) - Method in class org.openprovenance.model.OPMFactory

newOPMGraph(Accounts, Processes, Artifacts, Agents, CausalDependencies, Annotations) - Method in class org.openprovenance.model.OPMFactory

newOPMGraph(OPMGraph) - Method in class org.openprovenance.model.OPMFactory

newOTime(OTime) - Method in class org.openprovenance.elmo.RdfOPMFactory

newOTime(OTime) - Method in class org.openprovenance.model.OPMFactory

newOTime(XMLGregorianCalendar, XMLGregorianCalendar, XMLGregorianCalendar) - Method in class org.openprovenance.model.OPMFactory

newOTime(XMLGregorianCalendar, XMLGregorianCalendar) - Method in class org.openprovenance.model.OPMFactory

newOTime(XMLGregorianCalendar) - Method in class org.openprovenance.model.OPMFactory

newOTime(String, String) - Method in class org.openprovenance.model.OPMFactory

newOTime(Date, Date) - Method in class org.openprovenance.model.OPMFactory

newOTime(Date) - Method in class org.openprovenance.model.OPMFactory

newOverlaps(Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newOverlaps(AccountRef, AccountRef) - Method in class org.openprovenance.model.OPMFactory

newPName(String) - Method in class org.openprovenance.model.OPMFactory

newProcess(Process) - Method in class org.openprovenance.elmo.RdfOPMFactory

newProcess(QName) - Method in class org.openprovenance.elmo.RdfOPMFactory

newProcess(String, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newProcess(String, Collection<Account>, String) - Method in class org.openprovenance.model.OPMFactory

newProcess(Process) - Method in class org.openprovenance.model.OPMFactory

newProcessRef(Process) - Method in class org.openprovenance.model.OPMFactory

newProfile(String) - Method in class org.openprovenance.model.OPMFactory

newProperties(List<Property>) - Method in class org.openprovenance.elmo.RdfOPMFactory

newProperty(Property) - Method in class org.openprovenance.elmo.RdfOPMFactory

newProperty(String, Object) - Method in class org.openprovenance.model.OPMFactory

newProperty(Property) - Method in class org.openprovenance.model.OPMFactory

newRole(QName) - Method in class org.openprovenance.elmo.RdfOPMFactory

newRole(Role) - Method in class org.openprovenance.elmo.RdfOPMFactory

newRole(String) - Method in class org.openprovenance.model.OPMFactory

newRole(Role) - Method in class org.openprovenance.model.OPMFactory

newRole(String, String) - Method in class org.openprovenance.model.OPMFactory

newRoleRef(Role) - Method in class org.openprovenance.model.OPMFactory

newType(String) - Method in class org.openprovenance.model.OPMFactory

newUsed(Used) - Method in class org.openprovenance.elmo.RdfOPMFactory

newUsed(Used) - Method in class org.openprovenance.elmo.RdfOPMFactory

newUsed(String, ProcessRef, Role, ArtifactRef, Collection<AccountRef>) - Method in class org.openprovenance.model.OPMFactory

newUsed(Process, Role, Artifact, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newUsed(String, Process, Role, Artifact, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newUsed(String, Process, Role, Artifact, String, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newUsed(Used) - Method in class org.openprovenance.model.OPMFactory

newUsedStar(ProcessRef, ArtifactRef, Collection<AccountRef>) - Method in class org.openprovenance.model.OPMFactory

newUsedStar(Process, Artifact, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newValue(Object, String) - Method in class org.openprovenance.model.OPMFactory

newWasControlledBy(WasControlledBy) - Method in class org.openprovenance.elmo.RdfOPMFactory

newWasControlledBy(WasControlledBy) - Method in class org.openprovenance.elmo.RdfOPMFactory

newWasControlledBy(WasControlledBy) - Method in class org.openprovenance.model.OPMFactory

newWasControlledBy(ProcessRef, Role, AgentRef, Collection<AccountRef>) - Method in class org.openprovenance.model.OPMFactory

newWasControlledBy(String, ProcessRef, Role, AgentRef, Collection<AccountRef>) - Method in class org.openprovenance.model.OPMFactory

newWasControlledBy(Process, Role, Agent, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newWasControlledBy(String, Process, Role, Agent, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newWasControlledBy(String, Process, Role, Agent, String, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newWasDerivedFrom(WasDerivedFrom) - Method in class org.openprovenance.elmo.RdfOPMFactory

newWasDerivedFrom(WasDerivedFrom) - Method in class org.openprovenance.elmo.RdfOPMFactory

newWasDerivedFrom(WasDerivedFrom) - Method in class org.openprovenance.model.OPMFactory

newWasDerivedFrom(String, ArtifactRef, ArtifactRef, Collection<AccountRef>) - Method in class org.openprovenance.model.OPMFactory

newWasDerivedFrom(Artifact, Artifact, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newWasDerivedFrom(String, Artifact, Artifact, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newWasDerivedFrom(String, Artifact, Artifact, String, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newWasDerivedFromStar(ArtifactRef, ArtifactRef, Collection<AccountRef>) - Method in class org.openprovenance.model.OPMFactory

newWasDerivedFromStar(Artifact, Artifact, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newWasGeneratedBy(WasGeneratedBy) - Method in class org.openprovenance.elmo.RdfOPMFactory

newWasGeneratedBy(WasGeneratedBy) - Method in class org.openprovenance.elmo.RdfOPMFactory

newWasGeneratedBy(WasGeneratedBy) - Method in class org.openprovenance.model.OPMFactory

newWasGeneratedBy(String, ArtifactRef, Role, ProcessRef, Collection<AccountRef>) - Method in class org.openprovenance.model.OPMFactory

newWasGeneratedBy(Artifact, Role, Process, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newWasGeneratedBy(String, Artifact, Role, Process, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newWasGeneratedBy(String, Artifact, Role, Process, String, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newWasGeneratedByStar(ArtifactRef, ProcessRef, Collection<AccountRef>) - Method in class org.openprovenance.model.OPMFactory

newWasGeneratedByStar(Artifact, Process, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newWasIdenticalTo(String, Artifact, Artifact, Collection<Account>) - Method in class org.openprovenance.model.collections.CollectionFactory

newWasTriggeredBy(WasTriggeredBy) - Method in class org.openprovenance.elmo.RdfOPMFactory

newWasTriggeredBy(WasTriggeredBy) - Method in class org.openprovenance.elmo.RdfOPMFactory

newWasTriggeredBy(WasTriggeredBy) - Method in class org.openprovenance.model.OPMFactory

newWasTriggeredBy(String, ProcessRef, ProcessRef, Collection<AccountRef>) - Method in class org.openprovenance.model.OPMFactory

newWasTriggeredBy(Process, Process, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newWasTriggeredBy(String, Process, Process, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newWasTriggeredBy(String, Process, Process, String, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newWasTriggeredByStar(ProcessRef, ProcessRef, Collection<AccountRef>) - Method in class org.openprovenance.model.OPMFactory

newWasTriggeredByStar(Process, Process, Collection<Account>) - Method in class org.openprovenance.model.OPMFactory

newXMLGregorianCalendar(GregorianCalendar) - Method in class org.openprovenance.model.OPMFactory

noAnnotation(OPMGraph) - Method in class org.openprovenance.model.Normalise

Node - Interface in org.openprovenance.model

Node - Interface in org.openprovenance.rdf

noEarlierThan - Variable in class org.openprovenance.model.OTime

noLaterThan - Variable in class org.openprovenance.model.OTime

Normalise - Class in org.openprovenance.model

Normalise(OPMFactory) - Constructor for class org.openprovenance.model.Normalise

O

ObjectFactory - Class in org.openprovenance.model

This object contains factory methods for each Java content interface and Java element interface generated in the org.openprovenance.model package.

ObjectFactory() - Constructor for class org.openprovenance.model.ObjectFactory

Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: org.openprovenance.model

ObjectFactory - Class in org.openprovenance.model.printer

This object contains factory methods for each Java content interface and Java element interface generated in the org.openprovenance.model.printer package.

ObjectFactory() - Constructor for class org.openprovenance.model.printer.ObjectFactory

Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: org.openprovenance.model.printer

ObjectFactory - Class in org.openprovenance.profile.collections

This object contains factory methods for each Java content interface and Java element interface generated in the org.openprovenance.profile.collections package.

ObjectFactory() - Constructor for class org.openprovenance.profile.collections.ObjectFactory

Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: org.openprovenance.profile.collections

of - Variable in class org.openprovenance.model.IndexedOPMGraph

of - Variable in class org.openprovenance.model.OPMFactory

OPMDeserialiser - Class in org.openprovenance.model

Deserialiser of OPM Graphs.

OPMDeserialiser() - Constructor for class org.openprovenance.model.OPMDeserialiser

OPMDeserialiser(String) - Constructor for class org.openprovenance.model.OPMDeserialiser

OPMFactory - Class in org.openprovenance.model

A stateless factory of OPM objects.

OPMFactory() - Constructor for class org.openprovenance.model.OPMFactory

OPMFactory(ObjectFactory) - Constructor for class org.openprovenance.model.OPMFactory

OPMGraph - Class in org.openprovenance.model

Java class for OPMGraph complex type.

OPMGraph() - Constructor for class org.openprovenance.model.OPMGraph

OPMGraph - Interface in org.openprovenance.rdf

opmGraphIdPrefix - Static variable in class org.openprovenance.model.OPMFactory

OPMGraphRef - Class in org.openprovenance.model

Java class for OPMGraphRef complex type.

OPMGraphRef() - Constructor for class org.openprovenance.model.OPMGraphRef

OPMPrinterConfigDeserialiser - Class in org.openprovenance.model.printer

Deserialiser of OPM Graphs.

OPMPrinterConfigDeserialiser() - Constructor for class org.openprovenance.model.printer.OPMPrinterConfigDeserialiser

OPMPrinterConfigDeserialiser(String) - Constructor for class org.openprovenance.model.printer.OPMPrinterConfigDeserialiser

OPMPrinterConfiguration - Class in org.openprovenance.model.printer

Java class for OPMPrinterConfiguration complex type.

OPMPrinterConfiguration() - Constructor for class org.openprovenance.model.printer.OPMPrinterConfiguration

OPMRdf2Xml - Class in org.openprovenance.rdf

TODO: support for graph-level annotations

OPMRdf2Xml() - Constructor for class org.openprovenance.rdf.OPMRdf2Xml

OPMSerialiser - Class in org.openprovenance.model

Serialiser of OPM Graphs.

OPMSerialiser() - Constructor for class org.openprovenance.model.OPMSerialiser

OPMSerialiser(boolean) - Constructor for class org.openprovenance.model.OPMSerialiser

OPMSerialiser(String) - Constructor for class org.openprovenance.model.OPMSerialiser

OPMSerialiser(boolean, String) - Constructor for class org.openprovenance.model.OPMSerialiser

OPMToDot - Class in org.openprovenance.model

Serialisation of OPM Graphs to DOT format.

OPMToDot() - Constructor for class org.openprovenance.model.OPMToDot

OPMToDot(boolean) - Constructor for class org.openprovenance.model.OPMToDot

OPMToDot(String) - Constructor for class org.openprovenance.model.OPMToDot

OPMUtilities - Class in org.openprovenance.model

Utilities for manipulating OPM Graphs.

OPMUtilities() - Constructor for class org.openprovenance.model.OPMUtilities

OPMXml2Rdf - Class in org.openprovenance.rdf

OPMXml2Rdf() - Constructor for class org.openprovenance.rdf.OPMXml2Rdf

org.openprovenance.elmo - package org.openprovenance.elmo

org.openprovenance.model - package org.openprovenance.model

Open Provenance Model classes and associated factories and (de)serialisation methods.

org.openprovenance.model.collections - package org.openprovenance.model.collections

org.openprovenance.model.printer - package org.openprovenance.model.printer

org.openprovenance.profile.collections - package org.openprovenance.profile.collections

org.openprovenance.rdf - package org.openprovenance.rdf

OTime - Class in org.openprovenance.model

Observed Time allow for interval of observation, where an event is said to occur no earlier than a given time t1 and no later than a given time t2.

OTime() - Constructor for class org.openprovenance.model.OTime

OTime - Interface in org.openprovenance.rdf

overlaps - Variable in class org.openprovenance.model.Accounts

Overlaps - Class in org.openprovenance.model

Java class for Overlaps complex type.

Overlaps() - Constructor for class org.openprovenance.model.Overlaps

P

packageList - Static variable in class org.openprovenance.model.OPMFactory

PName - Class in org.openprovenance.model

Java class for PName complex type.

PName() - Constructor for class org.openprovenance.model.PName

PNAME_PROPERTY - Static variable in interface org.openprovenance.model.CommonURIs

printRole - Variable in class org.openprovenance.model.printer.EdgeStyleMapEntry

process - Variable in class org.openprovenance.model.printer.ProcessMap

Process - Class in org.openprovenance.model

Java class for Process complex type.

Process() - Constructor for class org.openprovenance.model.Process

process - Variable in class org.openprovenance.model.Processes

Process - Interface in org.openprovenance.rdf

processAnnotations(Annotable, Annotable) - Method in class org.openprovenance.elmo.RdfOPMFactory

processColor(Process) - Method in class org.openprovenance.model.OPMToDot

processes - Variable in class org.openprovenance.model.OPMGraph

processes - Variable in class org.openprovenance.model.printer.OPMPrinterConfiguration

Processes - Class in org.openprovenance.model

Java class for Processes complex type.

Processes() - Constructor for class org.openprovenance.model.Processes

processLabel(Process) - Method in class org.openprovenance.model.OPMToDot

ProcessMap - Class in org.openprovenance.model.printer

Java class for ProcessMap complex type.

ProcessMap() - Constructor for class org.openprovenance.model.printer.ProcessMap

ProcessMapEntry - Class in org.openprovenance.model.printer

Java class for ProcessMapEntry complex type.

ProcessMapEntry() - Constructor for class org.openprovenance.model.printer.ProcessMapEntry

ProcessRef - Class in org.openprovenance.model

Java class for ProcessRef complex type.

ProcessRef() - Constructor for class org.openprovenance.model.ProcessRef

Profile - Class in org.openprovenance.model

Java class for Profile complex type.

Profile() - Constructor for class org.openprovenance.model.Profile

PROFILE_PROPERTY - Static variable in interface org.openprovenance.model.CommonURIs

property - Variable in class org.openprovenance.model.EmbeddedAnnotation

Property - Class in org.openprovenance.model

Java class for Property complex type.

Property() - Constructor for class org.openprovenance.model.Property

Property - Interface in org.openprovenance.rdf

PropertyOrRole - Interface in org.openprovenance.rdf

R

RdfAccount - Class in org.openprovenance.elmo

RdfAccount(ElmoManager, QName) - Constructor for class org.openprovenance.elmo.RdfAccount

RdfAccount(ElmoManager, String) - Constructor for class org.openprovenance.elmo.RdfAccount

RdfAgent - Class in org.openprovenance.elmo

RdfAgent(ElmoManager, String) - Constructor for class org.openprovenance.elmo.RdfAgent

RdfAgent(ElmoManager, QName) - Constructor for class org.openprovenance.elmo.RdfAgent

RdfAnnotation - Class in org.openprovenance.elmo

RdfAnnotation(ElmoManager, QName) - Constructor for class org.openprovenance.elmo.RdfAnnotation

RdfAnnotation(ElmoManager, String) - Constructor for class org.openprovenance.elmo.RdfAnnotation

RdfArtifact - Class in org.openprovenance.elmo

RdfArtifact(ElmoManager, String) - Constructor for class org.openprovenance.elmo.RdfArtifact

RdfArtifact(ElmoManager, QName) - Constructor for class org.openprovenance.elmo.RdfArtifact

RdfEmbeddedAnnotation - Class in org.openprovenance.elmo

RdfEmbeddedAnnotation(ElmoManager, QName) - Constructor for class org.openprovenance.elmo.RdfEmbeddedAnnotation

RdfEmbeddedAnnotation(ElmoManager, String) - Constructor for class org.openprovenance.elmo.RdfEmbeddedAnnotation

RdfLabel - Class in org.openprovenance.elmo

RdfLabel(ElmoManager, String) - Constructor for class org.openprovenance.elmo.RdfLabel

RdfObjectFactory - Class in org.openprovenance.elmo

RdfObjectFactory(ElmoManager, String) - Constructor for class org.openprovenance.elmo.RdfObjectFactory

RdfOPMFactory - Class in org.openprovenance.elmo

The factory class to create OPM entities that can be serialised to rdf.

RdfOPMFactory(ObjectFactory) - Constructor for class org.openprovenance.elmo.RdfOPMFactory

RdfOPMFactory(ObjectFactory, ElmoManager) - Constructor for class org.openprovenance.elmo.RdfOPMFactory

RdfOPMGraph - Class in org.openprovenance.elmo

RdfOPMGraph(ElmoManager, String) - Constructor for class org.openprovenance.elmo.RdfOPMGraph

RdfOTime - Class in org.openprovenance.elmo

RdfOTime(ElmoManager, QName) - Constructor for class org.openprovenance.elmo.RdfOTime

RdfOTime(ElmoManager, String) - Constructor for class org.openprovenance.elmo.RdfOTime

RdfPName - Class in org.openprovenance.elmo

RdfPName(ElmoManager, String) - Constructor for class org.openprovenance.elmo.RdfPName

RdfProcess - Class in org.openprovenance.elmo

RdfProcess(ElmoManager, String) - Constructor for class org.openprovenance.elmo.RdfProcess

RdfProcess(ElmoManager, QName) - Constructor for class org.openprovenance.elmo.RdfProcess

RdfProfile - Class in org.openprovenance.elmo

RdfProfile(ElmoManager, String) - Constructor for class org.openprovenance.elmo.RdfProfile

RdfProperty - Class in org.openprovenance.elmo

RdfProperty(ElmoManager, QName) - Constructor for class org.openprovenance.elmo.RdfProperty

RdfProperty(ElmoManager, String) - Constructor for class org.openprovenance.elmo.RdfProperty

RdfRole - Class in org.openprovenance.elmo

RdfRole(ElmoManager, QName) - Constructor for class org.openprovenance.elmo.RdfRole

RdfRole(ElmoManager, QName, String) - Constructor for class org.openprovenance.elmo.RdfRole

RdfRole(ElmoManager, String) - Constructor for class org.openprovenance.elmo.RdfRole

rdfToXml(String, String, String, String) - Method in class org.openprovenance.elmo.RepositoryHelper

RdfType - Class in org.openprovenance.elmo

RdfType(ElmoManager, String) - Constructor for class org.openprovenance.elmo.RdfType

RdfUsed - Class in org.openprovenance.elmo

RdfUsed(ElmoManager, QName) - Constructor for class org.openprovenance.elmo.RdfUsed

RdfUsed(ElmoManager, String) - Constructor for class org.openprovenance.elmo.RdfUsed

RdfValue - Class in org.openprovenance.elmo

RdfValue(ElmoManager, QName) - Constructor for class org.openprovenance.elmo.RdfValue

RdfValue(ElmoManager, String) - Constructor for class org.openprovenance.elmo.RdfValue

RdfWasControlledBy - Class in org.openprovenance.elmo

RdfWasControlledBy(ElmoManager, QName) - Constructor for class org.openprovenance.elmo.RdfWasControlledBy

RdfWasControlledBy(ElmoManager, String) - Constructor for class org.openprovenance.elmo.RdfWasControlledBy

RdfWasDerivedFrom - Class in org.openprovenance.elmo

RdfWasDerivedFrom(ElmoManager, QName) - Constructor for class org.openprovenance.elmo.RdfWasDerivedFrom

RdfWasDerivedFrom(ElmoManager, String) - Constructor for class org.openprovenance.elmo.RdfWasDerivedFrom

RdfWasGeneratedBy - Class in org.openprovenance.elmo

RdfWasGeneratedBy(ElmoManager, QName) - Constructor for class org.openprovenance.elmo.RdfWasGeneratedBy

RdfWasGeneratedBy(ElmoManager, String) - Constructor for class org.openprovenance.elmo.RdfWasGeneratedBy

RdfWasTriggeredBy - Class in org.openprovenance.elmo

RdfWasTriggeredBy(ElmoManager, QName) - Constructor for class org.openprovenance.elmo.RdfWasTriggeredBy

RdfWasTriggeredBy(ElmoManager, String) - Constructor for class org.openprovenance.elmo.RdfWasTriggeredBy

readFromRDF(File, String, SesameManager, RDFFormat) - Method in class org.openprovenance.elmo.RepositoryHelper

ref - Variable in class org.openprovenance.model.AccountRef

ref - Variable in class org.openprovenance.model.AgentRef

ref - Variable in class org.openprovenance.model.AnnotationRef

ref - Variable in class org.openprovenance.model.ArtifactRef

ref - Variable in class org.openprovenance.model.CausalDependencyRef

ref - Variable in class org.openprovenance.model.OPMGraphRef

ref - Variable in class org.openprovenance.model.ProcessRef

Ref - Interface in org.openprovenance.model

ref - Variable in class org.openprovenance.model.RoleRef

register(QName, RdfAgent) - Method in class org.openprovenance.elmo.RdfOPMFactory

register(QName, RdfProcess) - Method in class org.openprovenance.elmo.RdfOPMFactory

register(QName, RdfArtifact) - Method in class org.openprovenance.elmo.RdfOPMFactory

register(QName, RdfAccount) - Method in class org.openprovenance.elmo.RdfOPMFactory

register(String, Agent) - Method in class org.openprovenance.elmo.RdfOPMFactory

register(String, Process) - Method in class org.openprovenance.elmo.RdfOPMFactory

register(String, Artifact) - Method in class org.openprovenance.elmo.RdfOPMFactory

register(String, Account) - Method in class org.openprovenance.elmo.RdfOPMFactory

registerConcepts(ElmoModule) - Method in class org.openprovenance.elmo.RepositoryHelper

RepositoryHelper - Class in org.openprovenance.elmo

RepositoryHelper() - Constructor for class org.openprovenance.elmo.RepositoryHelper

Role - Class in org.openprovenance.model

Java class for Role complex type.

Role() - Constructor for class org.openprovenance.model.Role

role - Variable in class org.openprovenance.model.Used

role - Variable in class org.openprovenance.model.WasControlledBy

role - Variable in class org.openprovenance.model.WasGeneratedBy

Role - Interface in org.openprovenance.rdf

roleIdPrefix - Static variable in class org.openprovenance.model.OPMFactory

RoleRef - Class in org.openprovenance.model

Java class for RoleRef complex type.

RoleRef() - Constructor for class org.openprovenance.model.RoleRef

S

selectColor(List<String>) - Method in class org.openprovenance.model.OPMToDot

serialiseOPMGraph(OPMGraph) - Method in class org.openprovenance.model.OPMSerialiser

serialiseOPMGraph(Node, OPMGraph) - Method in class org.openprovenance.model.OPMSerialiser

serialiseOPMGraph(StringWriter, OPMGraph) - Method in class org.openprovenance.model.OPMSerialiser

serialiseOPMGraph(StringWriter, OPMGraph, boolean) - Method in class org.openprovenance.model.OPMSerialiser

serialiseOPMGraph(File, OPMGraph, boolean) - Method in class org.openprovenance.model.OPMSerialiser

setAccounts(Set<? extends Account>) - Method in class org.openprovenance.elmo.RdfAgent

setAccounts(Set<? extends Account>) - Method in class org.openprovenance.elmo.RdfWasDerivedFrom

setAccounts(Set<? extends Account>) - Method in class org.openprovenance.elmo.RdfWasTriggeredBy

setAccounts(Accounts) - Method in class org.openprovenance.model.OPMGraph

Sets the value of the accounts property.

setAccounts(AccountMap) - Method in class org.openprovenance.model.printer.OPMPrinterConfiguration

Sets the value of the accounts property.

setAccounts(Set<? extends Account>) - Method in interface org.openprovenance.rdf.AnnotationOrEdgeOrNode

setAgents(Agents) - Method in class org.openprovenance.model.OPMGraph

Sets the value of the agents property.

setAgents(AgentMap) - Method in class org.openprovenance.model.printer.OPMPrinterConfiguration

Sets the value of the agents property.

setAnnotations(Set<? extends Annotation>) - Method in class org.openprovenance.elmo.RdfAgent

setAnnotations(Set<? extends Annotation>) - Method in class org.openprovenance.elmo.RdfRole

setAnnotations(Set<? extends Annotation>) - Method in class org.openprovenance.elmo.RdfWasDerivedFrom

setAnnotations(Set<? extends Annotation>) - Method in class org.openprovenance.elmo.RdfWasTriggeredBy

setAnnotations(Annotations) - Method in class org.openprovenance.model.OPMGraph

Sets the value of the annotations property.

setAnnotations(Set<? extends Annotation>) - Method in interface org.openprovenance.rdf.Annotable

setArtifacts(Artifacts) - Method in class org.openprovenance.model.OPMGraph

Sets the value of the artifacts property.

setArtifacts(ArtifactMap) - Method in class org.openprovenance.model.printer.OPMPrinterConfiguration

Sets the value of the artifacts property.

setAvalues(Set<? extends AValue>) - Method in interface org.openprovenance.rdf.Artifact

setCausalDependencies(CausalDependencies) - Method in class org.openprovenance.model.OPMGraph

Sets the value of the causalDependencies property.

setCause(ArtifactRef) - Method in class org.openprovenance.elmo.RdfUsed

setCause(AgentRef) - Method in class org.openprovenance.elmo.RdfWasControlledBy

setCause(ArtifactRef) - Method in class org.openprovenance.elmo.RdfWasDerivedFrom

setCause(ProcessRef) - Method in class org.openprovenance.elmo.RdfWasGeneratedBy

setCause(ProcessRef) - Method in class org.openprovenance.elmo.RdfWasTriggeredBy

setCause(ArtifactRef) - Method in class org.openprovenance.model.Used

Sets the value of the cause property.

setCause(ArtifactRef) - Method in class org.openprovenance.model.UsedStar

Sets the value of the cause property.

setCause(AgentRef) - Method in class org.openprovenance.model.WasControlledBy

Sets the value of the cause property.

setCause(ArtifactRef) - Method in class org.openprovenance.model.WasDerivedFrom

Sets the value of the cause property.

setCause(ArtifactRef) - Method in class org.openprovenance.model.WasDerivedFromStar

Sets the value of the cause property.

setCause(ProcessRef) - Method in class org.openprovenance.model.WasGeneratedBy

Sets the value of the cause property.

setCause(ProcessRef) - Method in class org.openprovenance.model.WasGeneratedByStar

Sets the value of the cause property.

setCause(ProcessRef) - Method in class org.openprovenance.model.WasTriggeredBy

Sets the value of the cause property.

setCause(ProcessRef) - Method in class org.openprovenance.model.WasTriggeredByStar

Sets the value of the cause property.

setCause(Node) - Method in interface org.openprovenance.rdf.Edge

the cause of an Edge

setColor(String) - Method in class org.openprovenance.model.printer.AccountColorMapEntry

Sets the value of the color property.

setColoredAsAccount(Boolean) - Method in class org.openprovenance.model.printer.AgentMap

Sets the value of the coloredAsAccount property.

setColoredAsAccount(Boolean) - Method in class org.openprovenance.model.printer.ArtifactMap

Sets the value of the coloredAsAccount property.

setColoredAsAccount(Boolean) - Method in class org.openprovenance.model.printer.ProcessMap

Sets the value of the coloredAsAccount property.

setContent(Object) - Method in class org.openprovenance.elmo.RdfValue

setContent(Object) - Method in class org.openprovenance.model.Value

Sets the value of the content property.

setContent(Object) - Method in interface org.openprovenance.rdf.AValue

setDefault(String) - Method in class org.openprovenance.model.printer.EdgeStyleMap

Sets the value of the default property.

setDefaultAccount(String) - Method in class org.openprovenance.model.printer.AccountMap

Sets the value of the defaultAccount property.

setDefaultColor(String) - Method in class org.openprovenance.model.printer.AccountMap

Sets the value of the defaultColor property.

setDisplay(String) - Method in class org.openprovenance.model.printer.AgentMapEntry

Sets the value of the display property.

setDisplay(String) - Method in class org.openprovenance.model.printer.ArtifactMapEntry

Sets the value of the display property.

setDisplay(String) - Method in class org.openprovenance.model.printer.ProcessMapEntry

Sets the value of the display property.

setDisplayArtifactValue(Boolean) - Method in class org.openprovenance.model.printer.OPMPrinterConfiguration

Sets the value of the displayArtifactValue property.

setDisplayValue(Boolean) - Method in class org.openprovenance.model.printer.AgentMap

Sets the value of the displayValue property.

setDisplayValue(Boolean) - Method in class org.openprovenance.model.printer.ArtifactMap

Sets the value of the displayValue property.

setDisplayValue(Boolean) - Method in class org.openprovenance.model.printer.ProcessMap

Sets the value of the displayValue property.

setEdgeRole(Set<? extends Role>) - Method in class org.openprovenance.elmo.RdfWasTriggeredBy

setEdges(EdgeStyleMap) - Method in class org.openprovenance.model.printer.OPMPrinterConfiguration

Sets the value of the edges property.

setEffect(ProcessRef) - Method in class org.openprovenance.elmo.RdfUsed

setEffect(ProcessRef) - Method in class org.openprovenance.elmo.RdfWasControlledBy

setEffect(ArtifactRef) - Method in class org.openprovenance.elmo.RdfWasDerivedFrom

setEffect(ArtifactRef) - Method in class org.openprovenance.elmo.RdfWasGeneratedBy

setEffect(ProcessRef) - Method in class org.openprovenance.elmo.RdfWasTriggeredBy

setEffect(ProcessRef) - Method in class org.openprovenance.model.Used

Sets the value of the effect property.

setEffect(ProcessRef) - Method in class org.openprovenance.model.UsedStar

Sets the value of the effect property.

setEffect(ProcessRef) - Method in class org.openprovenance.model.WasControlledBy

Sets the value of the effect property.

setEffect(ArtifactRef) - Method in class org.openprovenance.model.WasDerivedFrom

Sets the value of the effect property.

setEffect(ArtifactRef) - Method in class org.openprovenance.model.WasDerivedFromStar

Sets the value of the effect property.

setEffect(ArtifactRef) - Method in class org.openprovenance.model.WasGeneratedBy

Sets the value of the effect property.

setEffect(ArtifactRef) - Method in class org.openprovenance.model.WasGeneratedByStar

Sets the value of the effect property.

setEffect(ProcessRef) - Method in class org.openprovenance.model.WasTriggeredBy

Sets the value of the effect property.

setEffect(ProcessRef) - Method in class org.openprovenance.model.WasTriggeredByStar

Sets the value of the effect property.

setEffect(Node) - Method in interface org.openprovenance.rdf.Edge

the effect of an Edge

setEncoding(String) - Method in class org.openprovenance.elmo.RdfValue

setEncoding(String) - Method in class org.openprovenance.model.Value

Sets the value of the encoding property.

setEncoding(URI) - Method in interface org.openprovenance.rdf.AValue

setEndTime(OTime) - Method in class org.openprovenance.elmo.RdfWasControlledBy

setEndTime(OTime) - Method in class org.openprovenance.model.WasControlledBy

Sets the value of the endTime property.

setEndTime(OTime) - Method in interface org.openprovenance.rdf.WasControlledBy

the time at which the agent end controlling the process

setExactlyAt(XMLGregorianCalendar) - Method in class org.openprovenance.elmo.RdfOTime

setExactlyAt(XMLGregorianCalendar) - Method in class org.openprovenance.model.OTime

Sets the value of the exactlyAt property.

setExactlyAt(XMLGregorianCalendar) - Method in interface org.openprovenance.rdf.OTime

The event occurred exactly at this time.

setExternalSubject(String) - Method in class org.openprovenance.model.Annotation

Sets the value of the externalSubject property.

setFields(XMLGregorianCalendar, XMLGregorianCalendar, XMLGregorianCalendar) - Method in class org.openprovenance.elmo.RdfOTime

setFields(String, Object) - Method in class org.openprovenance.elmo.RdfProperty

setFields(ArtifactRef, ProcessRef, Role) - Method in class org.openprovenance.elmo.RdfUsed

setFields(Object, String) - Method in class org.openprovenance.elmo.RdfValue

setFields(AgentRef, ProcessRef, Role) - Method in class org.openprovenance.elmo.RdfWasControlledBy

setFields(ProcessRef, ArtifactRef, Role) - Method in class org.openprovenance.elmo.RdfWasGeneratedBy

setGeneratedRole(Set<? extends Role>) - Method in class org.openprovenance.elmo.RdfWasTriggeredBy

setGraphName(String) - Method in class org.openprovenance.model.printer.OPMPrinterConfiguration

Sets the value of the graphName property.

setHasAccount(Set<? extends Account>) - Method in interface org.openprovenance.rdf.OPMGraph

setHasAgent(Set<? extends Agent>) - Method in interface org.openprovenance.rdf.OPMGraph

setHasArtifact(Set<? extends Artifact>) - Method in interface org.openprovenance.rdf.OPMGraph

setHasDependency(Set<? extends Edge>) - Method in interface org.openprovenance.rdf.OPMGraph

setHasProcess(Set<? extends Process>) - Method in interface org.openprovenance.rdf.OPMGraph

setId(String) - Method in class org.openprovenance.elmo.RdfAccount

setId(String) - Method in class org.openprovenance.elmo.RdfAgent

setId(String) - Method in class org.openprovenance.elmo.RdfAnnotation

setId(String) - Method in class org.openprovenance.elmo.RdfArtifact

setId(String) - Method in class org.openprovenance.elmo.RdfEmbeddedAnnotation

setId(String) - Method in class org.openprovenance.elmo.RdfOPMGraph

setId(String) - Method in class org.openprovenance.elmo.RdfOTime

setId(String) - Method in class org.openprovenance.elmo.RdfProcess

setId(String) - Method in class org.openprovenance.elmo.RdfProperty

setId(String) - Method in class org.openprovenance.elmo.RdfRole

setId(String) - Method in class org.openprovenance.elmo.RdfUsed

setId(String) - Method in class org.openprovenance.elmo.RdfValue

setId(String) - Method in class org.openprovenance.elmo.RdfWasControlledBy

setId(String) - Method in class org.openprovenance.elmo.RdfWasDerivedFrom

setId(String) - Method in class org.openprovenance.elmo.RdfWasGeneratedBy

setId(String) - Method in class org.openprovenance.elmo.RdfWasTriggeredBy

setId(String) - Method in class org.openprovenance.model.Account

Sets the value of the id property.

setId(String) - Method in class org.openprovenance.model.Agent

Sets the value of the id property.

setId(String) - Method in class org.openprovenance.model.Artifact

Sets the value of the id property.

setId(String) - Method in class org.openprovenance.model.EmbeddedAnnotation

Sets the value of the id property.

setId(String) - Method in interface org.openprovenance.model.Identifiable

setId(String) - Method in class org.openprovenance.model.OPMGraph

Sets the value of the id property.

setId(String) - Method in class org.openprovenance.model.Process

Sets the value of the id property.

setId(String) - Method in class org.openprovenance.model.Role

Sets the value of the id property.

setId(String) - Method in class org.openprovenance.model.Used

Sets the value of the id property.

setId(String) - Method in class org.openprovenance.model.UsedStar

Sets the value of the id property.

setId(String) - Method in class org.openprovenance.model.WasControlledBy

Sets the value of the id property.

setId(String) - Method in class org.openprovenance.model.WasDerivedFrom

Sets the value of the id property.

setId(String) - Method in class org.openprovenance.model.WasDerivedFromStar

Sets the value of the id property.

setId(String) - Method in class org.openprovenance.model.WasGeneratedBy

Sets the value of the id property.

setId(String) - Method in class org.openprovenance.model.WasGeneratedByStar

Sets the value of the id property.

setId(String) - Method in class org.openprovenance.model.WasTriggeredBy

Sets the value of the id property.

setId(String) - Method in class org.openprovenance.model.WasTriggeredByStar

Sets the value of the id property.

setIdForCompactAnnotation(EmbeddedAnnotation, String) - Method in class org.openprovenance.model.OPMFactory

setLabels(Set<? extends String>) - Method in interface org.openprovenance.rdf.Annotable

setLocalSubject(Object) - Method in class org.openprovenance.elmo.RdfAnnotation

setLocalSubject(Object) - Method in class org.openprovenance.model.Annotation

Sets the value of the localSubject property.

setName(String) - Method in class org.openprovenance.model.printer.AccountColorMapEntry

Sets the value of the name property.

setName(String) - Method in class org.openprovenance.model.printer.MapEntry

Sets the value of the name property.

setNodes(ArtifactRef, ArtifactRef) - Method in class org.openprovenance.elmo.RdfWasDerivedFrom

setNodes(ProcessRef, ProcessRef) - Method in class org.openprovenance.elmo.RdfWasTriggeredBy

setNoEarlierThan(XMLGregorianCalendar) - Method in class org.openprovenance.elmo.RdfOTime

setNoEarlierThan(XMLGregorianCalendar) - Method in class org.openprovenance.model.OTime

Sets the value of the noEarlierThan property.

setNoEarlierThan(XMLGregorianCalendar) - Method in interface org.openprovenance.rdf.OTime

the event occurred no earlier than this time

setNoLaterThan(XMLGregorianCalendar) - Method in class org.openprovenance.elmo.RdfOTime

setNoLaterThan(XMLGregorianCalendar) - Method in class org.openprovenance.model.OTime

Sets the value of the noLaterThan property.

setNoLaterThan(XMLGregorianCalendar) - Method in interface org.openprovenance.rdf.OTime

the event occurred no later than this time

setPnames(Set<? extends URI>) - Method in interface org.openprovenance.rdf.Annotable

setPrefixes(RDFHandler, Collection<String[]>) - Method in class org.openprovenance.elmo.RepositoryHelper

setPrintRole(Boolean) - Method in class org.openprovenance.model.printer.EdgeStyleMapEntry

Sets the value of the printRole property.

setProcesses(Processes) - Method in class org.openprovenance.model.OPMGraph

Sets the value of the processes property.

setProcesses(ProcessMap) - Method in class org.openprovenance.model.printer.OPMPrinterConfiguration

Sets the value of the processes property.

setProfiles(Set<? extends String>) - Method in interface org.openprovenance.rdf.Annotable

setProperties(Set<? extends Property>) - Method in interface org.openprovenance.rdf.Annotation

setRef(Object) - Method in class org.openprovenance.model.AccountRef

Sets the value of the ref property.

setRef(Object) - Method in class org.openprovenance.model.AgentRef

Sets the value of the ref property.

setRef(Object) - Method in class org.openprovenance.model.AnnotationRef

Sets the value of the ref property.

setRef(Object) - Method in class org.openprovenance.model.ArtifactRef

Sets the value of the ref property.

setRef(Object) - Method in class org.openprovenance.model.CausalDependencyRef

Sets the value of the ref property.

setRef(Object) - Method in class org.openprovenance.model.OPMGraphRef

Sets the value of the ref property.

setRef(Object) - Method in class org.openprovenance.model.ProcessRef

Sets the value of the ref property.

setRef(Object) - Method in class org.openprovenance.model.RoleRef

Sets the value of the ref property.

setRole(Role) - Method in class org.openprovenance.elmo.RdfUsed

setRole(Role) - Method in class org.openprovenance.elmo.RdfWasControlledBy

setRole(Role) - Method in class org.openprovenance.elmo.RdfWasGeneratedBy

setRole(Role) - Method in class org.openprovenance.model.Used

Sets the value of the role property.

setRole(Role) - Method in class org.openprovenance.model.WasControlledBy

Sets the value of the role property.

setRole(Role) - Method in class org.openprovenance.model.WasGeneratedBy

Sets the value of the role property.

setRole(Role) - Method in interface org.openprovenance.rdf.UsedOrWasControlledByOrWasGeneratedBy

setStartTime(OTime) - Method in class org.openprovenance.elmo.RdfWasControlledBy

setStartTime(OTime) - Method in class org.openprovenance.model.WasControlledBy

Sets the value of the startTime property.

setStartTime(OTime) - Method in interface org.openprovenance.rdf.WasControlledBy

the time at which the agent began controlling the process

setStyle(String) - Method in class org.openprovenance.model.printer.EdgeStyleMapEntry

Sets the value of the style property.

setTime(OTime) - Method in class org.openprovenance.elmo.RdfUsed

setTime(OTime) - Method in class org.openprovenance.elmo.RdfWasGeneratedBy

setTime(OTime) - Method in class org.openprovenance.model.Used

Sets the value of the time property.

setTime(OTime) - Method in class org.openprovenance.model.WasDerivedFrom

Sets the value of the time property.

setTime(OTime) - Method in class org.openprovenance.model.WasGeneratedBy

Sets the value of the time property.

setTime(OTime) - Method in class org.openprovenance.model.WasTriggeredBy

Sets the value of the time property.

setTime(OTime) - Method in interface org.openprovenance.rdf.EventEdge

a piece of timing information associated with an event

setType(String) - Method in class org.openprovenance.model.printer.EdgeStyleMapEntry

Sets the value of the type property.

setTypes(Set<? extends URI>) - Method in interface org.openprovenance.rdf.Annotable

setUri(String) - Method in class org.openprovenance.elmo.RdfProperty

setUri(String) - Method in class org.openprovenance.model.Property

Sets the value of the uri property.

setUri(String) - Method in interface org.openprovenance.rdf.Property

setValue(Object) - Method in class org.openprovenance.elmo.RdfProperty

setValue(String) - Method in class org.openprovenance.elmo.RdfRole

setValue(String) - Method in class org.openprovenance.model.Label

Sets the value of the value property.

setValue(String) - Method in class org.openprovenance.model.PName

Sets the value of the value property.

setValue(String) - Method in class org.openprovenance.model.printer.AgentMapEntry

Sets the value of the value property.

setValue(String) - Method in class org.openprovenance.model.printer.ArtifactMapEntry

Sets the value of the value property.

setValue(String) - Method in class org.openprovenance.model.printer.MapEntry

Sets the value of the value property.

setValue(String) - Method in class org.openprovenance.model.printer.ProcessMapEntry

Sets the value of the value property.

setValue(String) - Method in class org.openprovenance.model.Profile

Sets the value of the value property.

setValue(Object) - Method in class org.openprovenance.model.Property

Sets the value of the value property.

setValue(String) - Method in class org.openprovenance.model.Role

Sets the value of the value property.

setValue(String) - Method in class org.openprovenance.model.Type

Sets the value of the value property.

setValue(Object) - Method in interface org.openprovenance.rdf.PropertyOrRole

the value of a role or a property

sortAccounts(List<Account>) - Method in class org.openprovenance.model.Normalise

sortAnnotations(List<JAXBElement<? extends EmbeddedAnnotation>>) - Method in class org.openprovenance.model.Normalise

sortAnnotationsIGNORE(List<EmbeddedAnnotation>) - Method in class org.openprovenance.model.Normalise

sortById(List) - Method in class org.openprovenance.model.Normalise

sortByRef(List) - Method in class org.openprovenance.model.Normalise

sortEdges(List) - Method in class org.openprovenance.model.Normalise

sortGraph(OPMGraph) - Method in class org.openprovenance.model.Normalise

sortProperties(List<Property>) - Method in class org.openprovenance.model.Normalise

startTime - Variable in class org.openprovenance.model.WasControlledBy

style - Variable in class org.openprovenance.model.printer.EdgeStyleMapEntry

T

time - Variable in class org.openprovenance.model.Used

time - Variable in class org.openprovenance.model.WasDerivedFrom

time - Variable in class org.openprovenance.model.WasGeneratedBy

time - Variable in class org.openprovenance.model.WasTriggeredBy

toRdf(Annotable) - Method in interface org.openprovenance.elmo.CompactAnnotation

toRdf(Annotable) - Method in class org.openprovenance.elmo.RdfLabel

toRdf(Annotable) - Method in class org.openprovenance.elmo.RdfPName

toRdf(Annotable) - Method in class org.openprovenance.elmo.RdfProfile

toRdf(Annotable) - Method in class org.openprovenance.elmo.RdfType

toRdf_DELETE(Annotable) - Method in class org.openprovenance.elmo.RdfLabel

toRdf_DELETE(Annotable) - Method in class org.openprovenance.elmo.RdfPName

toRdf_DELETE(Annotable) - Method in class org.openprovenance.elmo.RdfProfile

toString() - Method in class org.openprovenance.elmo.XMLLiteral

toString(ToStringBuilder) - Method in class org.openprovenance.model.Account

toString() - Method in class org.openprovenance.model.Account

toString(ToStringBuilder) - Method in class org.openprovenance.model.AccountRef

toString() - Method in class org.openprovenance.model.AccountRef

toString(ToStringBuilder) - Method in class org.openprovenance.model.Accounts

toString() - Method in class org.openprovenance.model.Accounts

toString(ToStringBuilder) - Method in class org.openprovenance.model.Agent

toString() - Method in class org.openprovenance.model.Agent

toString(ToStringBuilder) - Method in class org.openprovenance.model.AgentRef

toString() - Method in class org.openprovenance.model.AgentRef

toString(ToStringBuilder) - Method in class org.openprovenance.model.Agents

toString() - Method in class org.openprovenance.model.Agents

toString(ToStringBuilder) - Method in class org.openprovenance.model.Annotation

toString() - Method in class org.openprovenance.model.Annotation

toString(ToStringBuilder) - Method in class org.openprovenance.model.AnnotationRef

toString() - Method in class org.openprovenance.model.AnnotationRef

toString(ToStringBuilder) - Method in class org.openprovenance.model.Annotations

toString() - Method in class org.openprovenance.model.Annotations

toString(ToStringBuilder) - Method in class org.openprovenance.model.Artifact

toString() - Method in class org.openprovenance.model.Artifact

toString(ToStringBuilder) - Method in class org.openprovenance.model.ArtifactRef

toString() - Method in class org.openprovenance.model.ArtifactRef

toString(ToStringBuilder) - Method in class org.openprovenance.model.Artifacts

toString() - Method in class org.openprovenance.model.Artifacts

toString(ToStringBuilder) - Method in class org.openprovenance.model.CausalDependencies

toString() - Method in class org.openprovenance.model.CausalDependencies

toString(ToStringBuilder) - Method in class org.openprovenance.model.CausalDependencyRef

toString() - Method in class org.openprovenance.model.CausalDependencyRef

toString(ToStringBuilder) - Method in class org.openprovenance.model.EmbeddedAnnotation

toString() - Method in class org.openprovenance.model.EmbeddedAnnotation

toString(ToStringBuilder) - Method in class org.openprovenance.model.Label

toString() - Method in class org.openprovenance.model.Label

toString(ToStringBuilder) - Method in class org.openprovenance.model.OPMGraph

toString() - Method in class org.openprovenance.model.OPMGraph

toString(ToStringBuilder) - Method in class org.openprovenance.model.OPMGraphRef

toString() - Method in class org.openprovenance.model.OPMGraphRef

toString(ToStringBuilder) - Method in class org.openprovenance.model.OTime

toString() - Method in class org.openprovenance.model.OTime

toString(ToStringBuilder) - Method in class org.openprovenance.model.Overlaps

toString() - Method in class org.openprovenance.model.Overlaps

toString(ToStringBuilder) - Method in class org.openprovenance.model.PName

toString() - Method in class org.openprovenance.model.PName

toString(ToStringBuilder) - Method in class org.openprovenance.model.printer.AccountColorMapEntry

toString() - Method in class org.openprovenance.model.printer.AccountColorMapEntry

toString(ToStringBuilder) - Method in class org.openprovenance.model.printer.AccountMap

toString() - Method in class org.openprovenance.model.printer.AccountMap

toString(ToStringBuilder) - Method in class org.openprovenance.model.printer.AgentMap

toString() - Method in class org.openprovenance.model.printer.AgentMap

toString(ToStringBuilder) - Method in class org.openprovenance.model.printer.AgentMapEntry

toString() - Method in class org.openprovenance.model.printer.AgentMapEntry

toString(ToStringBuilder) - Method in class org.openprovenance.model.printer.ArtifactMap

toString() - Method in class org.openprovenance.model.printer.ArtifactMap

toString(ToStringBuilder) - Method in class org.openprovenance.model.printer.ArtifactMapEntry

toString() - Method in class org.openprovenance.model.printer.ArtifactMapEntry

toString(ToStringBuilder) - Method in class org.openprovenance.model.printer.EdgeStyleMap

toString() - Method in class org.openprovenance.model.printer.EdgeStyleMap

toString(ToStringBuilder) - Method in class org.openprovenance.model.printer.EdgeStyleMapEntry

toString() - Method in class org.openprovenance.model.printer.EdgeStyleMapEntry

toString(ToStringBuilder) - Method in class org.openprovenance.model.printer.Map

toString() - Method in class org.openprovenance.model.printer.Map

toString(ToStringBuilder) - Method in class org.openprovenance.model.printer.MapEntry

toString() - Method in class org.openprovenance.model.printer.MapEntry

toString(ToStringBuilder) - Method in class org.openprovenance.model.printer.OPMPrinterConfiguration

toString() - Method in class org.openprovenance.model.printer.OPMPrinterConfiguration

toString(ToStringBuilder) - Method in class org.openprovenance.model.printer.ProcessMap

toString() - Method in class org.openprovenance.model.printer.ProcessMap

toString(ToStringBuilder) - Method in class org.openprovenance.model.printer.ProcessMapEntry

toString() - Method in class org.openprovenance.model.printer.ProcessMapEntry

toString(ToStringBuilder) - Method in class org.openprovenance.model.Process

toString() - Method in class org.openprovenance.model.Process

toString(ToStringBuilder) - Method in class org.openprovenance.model.Processes

toString() - Method in class org.openprovenance.model.Processes

toString(ToStringBuilder) - Method in class org.openprovenance.model.ProcessRef

toString() - Method in class org.openprovenance.model.ProcessRef

toString(ToStringBuilder) - Method in class org.openprovenance.model.Profile

toString() - Method in class org.openprovenance.model.Profile

toString(ToStringBuilder) - Method in class org.openprovenance.model.Property

toString() - Method in class org.openprovenance.model.Property

toString(ToStringBuilder) - Method in class org.openprovenance.model.Role

toString() - Method in class org.openprovenance.model.Role

toString(ToStringBuilder) - Method in class org.openprovenance.model.RoleRef

toString() - Method in class org.openprovenance.model.RoleRef

toString(ToStringBuilder) - Method in class org.openprovenance.model.Type

toString() - Method in class org.openprovenance.model.Type

toString(ToStringBuilder) - Method in class org.openprovenance.model.Used

toString() - Method in class org.openprovenance.model.Used

toString(ToStringBuilder) - Method in class org.openprovenance.model.UsedStar

toString() - Method in class org.openprovenance.model.UsedStar

toString(ToStringBuilder) - Method in class org.openprovenance.model.Value

toString() - Method in class org.openprovenance.model.Value

toString(ToStringBuilder) - Method in class org.openprovenance.model.WasControlledBy

toString() - Method in class org.openprovenance.model.WasControlledBy

toString(ToStringBuilder) - Method in class org.openprovenance.model.WasDerivedFrom

toString() - Method in class org.openprovenance.model.WasDerivedFrom

toString(ToStringBuilder) - Method in class org.openprovenance.model.WasDerivedFromStar

toString() - Method in class org.openprovenance.model.WasDerivedFromStar

toString(ToStringBuilder) - Method in class org.openprovenance.model.WasGeneratedBy

toString() - Method in class org.openprovenance.model.WasGeneratedBy

toString(ToStringBuilder) - Method in class org.openprovenance.model.WasGeneratedByStar

toString() - Method in class org.openprovenance.model.WasGeneratedByStar

toString(ToStringBuilder) - Method in class org.openprovenance.model.WasTriggeredBy

toString() - Method in class org.openprovenance.model.WasTriggeredBy

toString(ToStringBuilder) - Method in class org.openprovenance.model.WasTriggeredByStar

toString() - Method in class org.openprovenance.model.WasTriggeredByStar

triplifyAnnotation(Annotation) - Method in class org.openprovenance.rdf.OPMXml2Rdf

triplifyAnnotations(Resource, List<JAXBElement<? extends EmbeddedAnnotation>>) - Method in class org.openprovenance.rdf.OPMXml2Rdf

Tutorial - Class in org.openprovenance.rdf

Tutorial() - Constructor for class org.openprovenance.rdf.Tutorial

type - Variable in class org.openprovenance.model.printer.EdgeStyleMapEntry

Type - Class in org.openprovenance.model

Java class for Type complex type.

Type() - Constructor for class org.openprovenance.model.Type

TYPE_PROPERTY - Static variable in interface org.openprovenance.model.CommonURIs

TypeURI - Enum in org.openprovenance.profile.collections

Java class for typeURI.

U

union(OPMGraph, OPMGraph) - Method in class org.openprovenance.model.OPMUtilities

union(Accounts, Accounts) - Method in class org.openprovenance.model.OPMUtilities

union(Agents, Agents) - Method in class org.openprovenance.model.OPMUtilities

union(Processes, Processes) - Method in class org.openprovenance.model.OPMUtilities

union(Artifacts, Artifacts) - Method in class org.openprovenance.model.OPMUtilities

union(CausalDependencies, CausalDependencies) - Method in class org.openprovenance.model.OPMUtilities

updateFromRdfGraph(OPMGraph) - Method in class org.openprovenance.model.Normalise

updateOriginalGraph(OPMGraph) - Method in class org.openprovenance.model.Normalise

uri - Variable in class org.openprovenance.model.Property

URI_PREFIX - Static variable in class org.openprovenance.rdf.OPMXml2Rdf

urify(String) - Method in class org.openprovenance.rdf.OPMXml2Rdf

USAGE - Static variable in class org.openprovenance.model.OPMToDot

Used - Class in org.openprovenance.model

Java class for Used complex type.

Used() - Constructor for class org.openprovenance.model.Used

Used - Interface in org.openprovenance.rdf

usedIdPrefix - Static variable in class org.openprovenance.model.OPMFactory

UsedOrWasControlledByOrWasGeneratedBy - Interface in org.openprovenance.rdf

usedOrWasGeneratedByOrWasTriggeredBy - Variable in class org.openprovenance.model.CausalDependencies

UsedStar - Class in org.openprovenance.model

Java class for UsedStar complex type.

UsedStar() - Constructor for class org.openprovenance.model.UsedStar

usePrefixMapper - Variable in class org.openprovenance.model.OPMSerialiser

V

validateOPMGraph(String[], File) - Method in class org.openprovenance.model.OPMDeserialiser

value - Variable in class org.openprovenance.model.Label

value - Variable in class org.openprovenance.model.PName

value - Variable in class org.openprovenance.model.printer.AgentMapEntry

value - Variable in class org.openprovenance.model.printer.ArtifactMapEntry

value - Variable in class org.openprovenance.model.printer.MapEntry

value - Variable in class org.openprovenance.model.printer.ProcessMapEntry

value - Variable in class org.openprovenance.model.Profile

value - Variable in class org.openprovenance.model.Property

value - Variable in class org.openprovenance.model.Role

value - Variable in class org.openprovenance.model.Type

Value - Class in org.openprovenance.model

Java class for Value complex type.

Value() - Constructor for class org.openprovenance.model.Value

value() - Method in enum org.openprovenance.profile.collections.TypeURI

VALUE_PROPERTY - Static variable in interface org.openprovenance.model.CommonURIs

valueOf(String) - Static method in enum org.openprovenance.profile.collections.TypeURI

Returns the enum constant of this type with the specified name.

values() - Static method in enum org.openprovenance.profile.collections.TypeURI

Returns an array containing the constants of this enum type, in the order they are declared.

view(OPMGraph, Accounts) - Method in class org.openprovenance.model.OPMUtilities

W

WasControlledBy - Class in org.openprovenance.model

Java class for WasControlledBy complex type.

WasControlledBy() - Constructor for class org.openprovenance.model.WasControlledBy

WasControlledBy - Interface in org.openprovenance.rdf

wasControlledByIdPrefix - Static variable in class org.openprovenance.model.OPMFactory

WASCOPYOF - Static variable in interface org.openprovenance.model.collections.CollectionURIs

WasDerivedFrom - Class in org.openprovenance.model

Java class for WasDerivedFrom complex type.

WasDerivedFrom() - Constructor for class org.openprovenance.model.WasDerivedFrom

WasDerivedFrom - Interface in org.openprovenance.rdf

wasDerivedFromIdPrefix - Static variable in class org.openprovenance.model.OPMFactory

WasDerivedFromStar - Class in org.openprovenance.model

Java class for WasDerivedFromStar complex type.

WasDerivedFromStar() - Constructor for class org.openprovenance.model.WasDerivedFromStar

wasGenerateByIdPrefix - Static variable in class org.openprovenance.model.OPMFactory

WasGeneratedBy - Class in org.openprovenance.model

Java class for WasGeneratedBy complex type.

WasGeneratedBy() - Constructor for class org.openprovenance.model.WasGeneratedBy

WasGeneratedBy - Interface in org.openprovenance.rdf

WasGeneratedByStar - Class in org.openprovenance.model

Java class for WasGeneratedByStar complex type.

WasGeneratedByStar() - Constructor for class org.openprovenance.model.WasGeneratedByStar

WASIDENTICALTO - Static variable in interface org.openprovenance.model.collections.CollectionURIs

WASMAPPEDFROM - Static variable in interface org.openprovenance.model.collections.CollectionURIs

WASPARTOF - Static variable in interface org.openprovenance.model.collections.CollectionURIs

WasTriggeredBy - Class in org.openprovenance.model

Java class for WasTriggeredBy complex type.

WasTriggeredBy() - Constructor for class org.openprovenance.model.WasTriggeredBy

WasTriggeredBy - Interface in org.openprovenance.rdf

wasTriggeredByIdPrefix - Static variable in class org.openprovenance.model.OPMFactory

WasTriggeredByStar - Class in org.openprovenance.model

Java class for WasTriggeredByStar complex type.

WasTriggeredByStar() - Constructor for class org.openprovenance.model.WasTriggeredByStar

X

XMLLiteral - Class in org.openprovenance.elmo

XMLLiteral support was dropped because they where being mapped to org.w3c.dom.Document and did not support XML fragments (multiple roots elements).

XMLLiteral(String) - Constructor for class org.openprovenance.elmo.XMLLiteral

XMLLiteral(Document) - Constructor for class org.openprovenance.elmo.XMLLiteral

xmlToN3(String, String, String, String) - Method in class org.openprovenance.elmo.RepositoryHelper

xmlToRdf(String, String, String, String) - Method in class org.openprovenance.elmo.RepositoryHelper

xmlToRdf(String, String, String, String, RDFFormat) - Method in class org.openprovenance.elmo.RepositoryHelper

_

_default - Variable in class org.openprovenance.model.printer.EdgeStyleMap

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