TR air::align_warp( in refimg, in refhdr, in subimg, in subhdr, model, quick, out warp )
{
    argument = ${refimg};
    argument = ${subimg};
    argument = ${warp};
    argument = "-m " ${model};
    argument = ${quick};
}

TR air::reslice( in warp, in subimg, in subhdr, out slicedimg, out slicedhdr )
{
    argument = ${warp};
    argument = ${slicedimg};
}

TR air::softmean( in slicedimgs[], in slicedhdrs[], overwrite = "y", scalingsuffix = "null",
    out atlasimg, out atlashdr )
{
    argument = ${atlasimg};
    argument = ${overwrite} " " ${scalingsuffix};
    argument = ${slicedimgs};
}

TR fsl::slicer( in inhdr, in inimg, axis, position, out outslice )
{
    argument = ${inimg};
    argument = ${axis};
    argument = ${position};
    argument = ${outslice};
}

TR unix::convert( in inpgm, out outgif )
{
    argument = ${inpgm};
    argument = ${outgif};
}

DV wilde.pc1.wf01::align_warp.1->air::align_warp(
    refhdr = @{in:"Data/Raw/reference.hdr"},
    refimg = @{in:"Data/Raw/reference.img"},
    subhdr = @{in:"Data/Raw/anatomy1.hdr"},
    subimg = @{in:"Data/Raw/anatomy1.img"},
    warp = @{out:"Data/Derived/warp1.warp"},
    model = "12",
    quick = "-q"
);

DV wilde.pc1.wf01::reslice.2->air::reslice(
    warp = @{in:"Data/Derived/warp1.warp"},
    subhdr = @{in:"Data/Raw/anatomy1.hdr"},
    subimg = @{in:"Data/Raw/anatomy1.img"},
    slicedhdr = @{out:"Data/Derived/resliced1.hdr"},
    slicedimg = @{out:"Data/Derived/resliced1.img"}
);

DV wilde.pc1.wf01::align_warp.3->air::align_warp(
    refhdr = @{in:"Data/Raw/reference.hdr"},
    refimg = @{in:"Data/Raw/reference.img"},
    subhdr = @{in:"Data/Raw/anatomy2.hdr"},
    subimg = @{in:"Data/Raw/anatomy2.img"},
    warp = @{out:"Data/Derived/warp2.warp"},
    model = "12",
    quick = "-q"
);

DV wilde.pc1.wf01::reslice.4->air::reslice(
    warp = @{in:"Data/Derived/warp2.warp"},
    subhdr = @{in:"Data/Raw/anatomy2.hdr"},
    subimg = @{in:"Data/Raw/anatomy2.img"},
    slicedhdr = @{out:"Data/Derived/resliced2.hdr"},
    slicedimg = @{out:"Data/Derived/resliced2.img"}
);

DV wilde.pc1.wf01::align_warp.5->air::align_warp(
    refhdr = @{in:"Data/Raw/reference.hdr"},
    refimg = @{in:"Data/Raw/reference.img"},
    subhdr = @{in:"Data/Raw/anatomy3.hdr"},
    subimg = @{in:"Data/Raw/anatomy3.img"},
    warp = @{out:"Data/Derived/warp3.warp"},
    model = "12",
    quick = "-q"
);

DV wilde.pc1.wf01::reslice.6->air::reslice(
    warp = @{in:"Data/Derived/warp3.warp"},
    subhdr = @{in:"Data/Raw/anatomy3.hdr"},
    subimg = @{in:"Data/Raw/anatomy3.img"},
    slicedhdr = @{out:"Data/Derived/resliced3.hdr"},
    slicedimg = @{out:"Data/Derived/resliced3.img"}
);

DV wilde.pc1.wf01::align_warp.7->air::align_warp(
    refhdr = @{in:"Data/Raw/reference.hdr"},
    refimg = @{in:"Data/Raw/reference.img"},
    subhdr = @{in:"Data/Raw/anatomy4.hdr"},
    subimg = @{in:"Data/Raw/anatomy4.img"},
    warp = @{out:"Data/Derived/warp4.warp"},
    model = "12",
    quick = "-q"
);

DV wilde.pc1.wf01::reslice.8->air::reslice(
    warp = @{in:"Data/Derived/warp4.warp"},
    subhdr = @{in:"Data/Raw/anatomy4.hdr"},
    subimg = @{in:"Data/Raw/anatomy4.img"},
    slicedhdr = @{out:"Data/Derived/resliced4.hdr"},
    slicedimg = @{out:"Data/Derived/resliced4.img"}
);

DV wilde.pc1.wf01::softmean.9->air::softmean(
    slicedimgs = [
        @{in:"Data/Derived/resliced1.img"},
        @{in:"Data/Derived/resliced2.img"},
        @{in:"Data/Derived/resliced3.img"},
        @{in:"Data/Derived/resliced4.img"} ],
    slicedhdrs = [
        @{in:"Data/Derived/resliced1.hdr"},
        @{in:"Data/Derived/resliced2.hdr"},
        @{in:"Data/Derived/resliced3.hdr"},
        @{in:"Data/Derived/resliced4.hdr"} ],
    overwrite = "n",
    scalingsuffix = "null",
    atlasimg = @{out:"Data/Derived/atlas.img"},
    atlashdr = @{out:"Data/Derived/atlas.hdr"}
);

DV wilde.pc1.wf01::slicer.10->fsl::slicer(
    inimg = @{in:"Data/Derived/atlas.img"},
    inhdr = @{in:"Data/Derived/atlas.hdr"},
    axis = "-x",
    position = ".5",
    outslice = @{out:"Data/Derived/atlas-x.pgm"}
);

DV wilde.pc1.wf01::slicer.11->fsl::slicer(
    inimg = @{in:"Data/Derived/atlas.img"},
    inhdr = @{in:"Data/Derived/atlas.hdr"},
    axis = "-y",
    position = ".5",
    outslice = @{out:"Data/Derived/atlas-y.pgm"}
);

DV wilde.pc1.wf01::slicer.12->fsl::slicer(
    inimg = @{in:"Data/Derived/atlas.img"},
    inhdr = @{in:"Data/Derived/atlas.hdr"},
    axis = "-z",
    position = ".5",
    outslice = @{out:"Data/Derived/atlas-z.pgm"}
);

DV wilde.pc1.wf01::convert.13->unix::convert(
    inpgm = @{in:"Data/Derived/atlas-x.pgm"},
    outgif = @{out:"Data/Derived/atlas-x.gif"}
);

DV wilde.pc1.wf01::convert.14->unix::convert(
    inpgm = @{in:"Data/Derived/atlas-y.pgm"},
    outgif = @{out:"Data/Derived/atlas-y.gif"}
);

DV wilde.pc1.wf01::convert.15->unix::convert(
    inpgm = @{in:"Data/Derived/atlas-z.pgm"},
    outgif = @{out:"Data/Derived/atlas-z.gif"}
);