# Clean out the VDC

deletevdc -f

psql -d mwvdc1 -U wilde -f - <<EOF
delete from ptc_invocation;
delete from ptc_job;
delete from ptc_lfn;
delete from ptc_rusage;
delete from ptc_stat;
delete from ptc_uname;

delete from dv;
delete from tr;
delete from targ;
delete from darg;

EOF

# Remove derived files and old provenence records

rm -f Data/Derived/* *_ID*.out

# Clean out the Replica Catalog and recatalog input files

initrc.sh

# Clean out the Transformation Catalog and recatalog transformations

inittc.sh

# Compile the VDL script

vdlc -l pc1.wf01 -f Data/Derived/atlas-x.gif,Data/Derived/atlas-y.gif,Data/Derived/atlas-z.gif genatlas.vdl

# Augment the VDC with TR info

vdlt2vdlx <genatlas.vdl | extract_trdefs

# Generate the shell-based workflow script

shplanner -b -k /home/wilde/vdscvs/vds/dist/vds-1.4.7cvs/bin/kickstart -o . genatlas.dax

# Application-specific setup (move this to profiles?)

source fmritools/fsl_3.2/etc/fslconf/fsl.sh

# Run the workflow

./pc1.wf01.sh 

# Store the runtime provenance in the VDC

exitcode -l pc1.wf01 -m 2006-09-11T00:00:01-0600 *_ID*.out

# Get provenance for entire workflow

prdax < genatlas.dax >genatlas.pro
drawwf.sh genatlas

# Get provenance for just the Atlas-X file

gendax -o genatlasx.dax -l pc1.wf01 -f Data/Derived/atlas-x.gif
prdax < genatlasx.dax >genatlasx.pro
drawwf.sh genatlasx