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Test Snakemake workflow

  • Created on 19 Sep 2019 at 11:07
  • by agaignar
  • 113 views
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document
  default <http://snakemake-provenance#>
  prefix crypto <http://id.loc.gov/vocabulary/preservation/cryptographicHashFunctions#>
  prefix rdfs <http://www.w3.org/2000/01/rdf-schema#>
  
  agent(gaignard-a)
  bundle d76cf8d9-76da-45e4-bd31-8dcbf1caaab2
    default <http://snakemake-provenance#>
    prefix crypto <http://id.loc.gov/vocabulary/preservation/cryptographicHashFunctions#>
    prefix rdfs <http://www.w3.org/2000/01/rdf-schema#>
    
    wasDerivedFrom(merged.tar, merged.txt, -, -, -)
    wasDerivedFrom(merged.txt, input3.processed.txt, -, -, -)
    wasDerivedFrom(merged.txt, input2.processed.txt, -, -, -)
    wasDerivedFrom(merged.txt, input1.processed.txt, -, -, -)
    wasDerivedFrom(input3.processed.txt, input3.txt, -, -, -)
    wasDerivedFrom(input2.processed.txt, input2.txt, -, -, -)
    wasDerivedFrom(input1.processed.txt, input1.txt, -, -, -)
    wasGeneratedBy(merged.tar, activity-archive-7f49ddab-ff89-4e5f-9be6-8f3ddc95b7d8, -)
    wasGeneratedBy(merged.txt, activity-merge-309010d9-f51d-4ecc-be72-e0793b461daa, -)
    wasGeneratedBy(input3.processed.txt, activity-rename-a122d70f-ba67-4713-8854-2688769cd3ea, -)
    wasGeneratedBy(input2.processed.txt, activity-rename-d2c4a75e-97ab-4efb-888b-7ffd6999caae, -)
    wasGeneratedBy(input1.processed.txt, activity-rename-f52f36ea-e584-4bc8-b540-95025cbe2cf9, -)
    used(activity-all-43e15dbf-bd8d-45f5-a894-c1f4bbd35f41, merged.tar, -)
    used(activity-archive-7f49ddab-ff89-4e5f-9be6-8f3ddc95b7d8, merged.txt, -)
    used(activity-merge-309010d9-f51d-4ecc-be72-e0793b461daa, input3.processed.txt, -)
    used(activity-merge-309010d9-f51d-4ecc-be72-e0793b461daa, input2.processed.txt, -)
    used(activity-merge-309010d9-f51d-4ecc-be72-e0793b461daa, input1.processed.txt, -)
    used(activity-rename-a122d70f-ba67-4713-8854-2688769cd3ea, input3.txt, -)
    used(activity-rename-d2c4a75e-97ab-4efb-888b-7ffd6999caae, input2.txt, -)
    used(activity-rename-f52f36ea-e584-4bc8-b540-95025cbe2cf9, input1.txt, -)
    entity(merged.tar, [crypto:sha512="b379ca6bd9a5173115c28cf803bea9e733860d679863d623ef4fda79193adfc53f72b83505066c9dd522c2392b9ed3bde29dc04c44dfb7f5120da54e62cedda6"])
    entity(merged.tar, [crypto:sha512="b379ca6bd9a5173115c28cf803bea9e733860d679863d623ef4fda79193adfc53f72b83505066c9dd522c2392b9ed3bde29dc04c44dfb7f5120da54e62cedda6"])
    entity(merged.txt, [crypto:sha512="397118fdac8d83ad98813c50759c85b8c47565d8268bf10da483153b747a74743a58a90e85aa9f705ce6984ffc128db567489817e4092d050d8a1cc596ddc119"])
    entity(merged.txt, [crypto:sha512="397118fdac8d83ad98813c50759c85b8c47565d8268bf10da483153b747a74743a58a90e85aa9f705ce6984ffc128db567489817e4092d050d8a1cc596ddc119"])
    entity(input3.processed.txt, [crypto:sha512="3d637ae63d59522dd3cb1b81c1ad67e56d46185b0971e0bc7dd2d8ad3b26090acb634c252fc6a63b3766934314ea1a6e59fa0c8c2bc027a7b6a460b291cd4dfb"])
    entity(input3.processed.txt, [crypto:sha512="3d637ae63d59522dd3cb1b81c1ad67e56d46185b0971e0bc7dd2d8ad3b26090acb634c252fc6a63b3766934314ea1a6e59fa0c8c2bc027a7b6a460b291cd4dfb"])
    entity(input3.txt, [crypto:sha512="3d637ae63d59522dd3cb1b81c1ad67e56d46185b0971e0bc7dd2d8ad3b26090acb634c252fc6a63b3766934314ea1a6e59fa0c8c2bc027a7b6a460b291cd4dfb"])
    entity(input2.processed.txt, [crypto:sha512="848b0779ff415f0af4ea14df9dd1d3c29ac41d836c7808896c4eba19c51ac40a439caf5e61ec88c307c7d619195229412eaa73fb2a5ea20d23cc86a9d8f86a0f"])
    entity(input2.processed.txt, [crypto:sha512="848b0779ff415f0af4ea14df9dd1d3c29ac41d836c7808896c4eba19c51ac40a439caf5e61ec88c307c7d619195229412eaa73fb2a5ea20d23cc86a9d8f86a0f"])
    entity(input2.txt, [crypto:sha512="848b0779ff415f0af4ea14df9dd1d3c29ac41d836c7808896c4eba19c51ac40a439caf5e61ec88c307c7d619195229412eaa73fb2a5ea20d23cc86a9d8f86a0f"])
    entity(input1.processed.txt, [crypto:sha512="21b4f4bd9e64ed355c3eb676a28ebedaf6d8f17bdc365995b319097153044080516bd083bfcce66121a3072646994c8430cc382b8dc543e84880183bf856cff5"])
    entity(input1.processed.txt, [crypto:sha512="21b4f4bd9e64ed355c3eb676a28ebedaf6d8f17bdc365995b319097153044080516bd083bfcce66121a3072646994c8430cc382b8dc543e84880183bf856cff5"])
    entity(input1.txt, [crypto:sha512="21b4f4bd9e64ed355c3eb676a28ebedaf6d8f17bdc365995b319097153044080516bd083bfcce66121a3072646994c8430cc382b8dc543e84880183bf856cff5"])
    wasAssociatedWith(activity-all-43e15dbf-bd8d-45f5-a894-c1f4bbd35f41, all, -)
    wasAssociatedWith(activity-archive-7f49ddab-ff89-4e5f-9be6-8f3ddc95b7d8, archive, -)
    wasAssociatedWith(activity-merge-309010d9-f51d-4ecc-be72-e0793b461daa, merge, -)
    wasAssociatedWith(activity-rename-a122d70f-ba67-4713-8854-2688769cd3ea, rename, -)
    wasAssociatedWith(activity-rename-d2c4a75e-97ab-4efb-888b-7ffd6999caae, rename, -)
    wasAssociatedWith(activity-rename-f52f36ea-e584-4bc8-b540-95025cbe2cf9, rename, -)
    activity(activity-all-43e15dbf-bd8d-45f5-a894-c1f4bbd35f41, 2019-09-19T12:06:26.583371, -)
    activity(activity-archive-7f49ddab-ff89-4e5f-9be6-8f3ddc95b7d8, 2019-09-19T12:06:26.582591, -, [rdfs:comment="tar cvf merged.tar merged.txt"])
    activity(activity-merge-309010d9-f51d-4ecc-be72-e0793b461daa, 2019-09-19T12:06:26.581420, -, [rdfs:comment="cat input1.processed.txt input2.processed.txt input3.processed.txt > merged.txt"])
    activity(activity-rename-a122d70f-ba67-4713-8854-2688769cd3ea, 2019-09-19T12:06:26.580457, -, [rdfs:comment="mv input3.txt input3.processed.txt"])
    activity(activity-rename-d2c4a75e-97ab-4efb-888b-7ffd6999caae, 2019-09-19T12:06:26.579336, -, [rdfs:comment="mv input2.txt input2.processed.txt"])
    activity(activity-rename-f52f36ea-e584-4bc8-b540-95025cbe2cf9, 2019-09-19T12:06:26.578267, -, [rdfs:comment="mv input1.txt input1.processed.txt"])
    activity(f9767c54-e1e2-4ce7-96cd-5fe85fc24cfe, 2019-09-19T12:06:26.549314, 2019-09-19T12:06:26.584045)
    wasAttributedTo(merged.tar, archive)
    wasAttributedTo(merged.txt, merge)
    wasAttributedTo(input3.processed.txt, rename)
    wasAttributedTo(input2.processed.txt, rename)
    wasAttributedTo(input1.processed.txt, rename)
    wasAttributedTo(d76cf8d9-76da-45e4-bd31-8dcbf1caaab2, gaignard-a)
  endBundle
endDocument
        
Bundles
d76cf8d9-76da-45e4-bd31-8dcbf1caaab2
http://snakemake-provenance#d76cf8d9-76da-45e4-bd31-8dcbf1caaab2 · 1¬†month, 3¬†weeks ago
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Assertions #
agent1
wasDerivedFrom7
wasGeneratedBy5
used8
entity13
wasAssociatedWith6
activity7
wasAttributedTo6